DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dor and vps18

DIOPT Version :9

Sequence 1:NP_477286.2 Gene:dor / 31118 FlyBaseID:FBgn0000482 Length:1002 Species:Drosophila melanogaster
Sequence 2:NP_001121454.1 Gene:vps18 / 100158548 XenbaseID:XB-GENE-1007587 Length:968 Species:Xenopus tropicalis


Alignment Length:994 Identity:328/994 - (32%)
Similarity:541/994 - (54%) Gaps:94/994 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 DDEDEIFSRHKMVLRVPSNCTGDLMHLAVSRNWLVCLLGTPERTTLLRFFLPRAIPPGEAVLEKY 103
            :.|..||::.::....|.|    :..|.|..|.|...||   :.::||..|.:|..|.:..|.: 
 Frog    37 EKEMPIFNKQRIDFTPPEN----INSLFVCSNQLCMSLG---KDSILRIDLMKADQPNQVDLGR- 93

  Fly   104 LSGSGYKITRMFLDPTGHHIIIALVPKSATAGVSPDFLYIHCLESPQAQQLKVRRIEKFKDHEIT 168
              ...:::.::||||||.|::|::        .|.:.||:    :..||  |||.:.:::.|.:.
 Frog    94 --KDDFRVHKIFLDPTGSHLLISV--------SSSECLYL----NRNAQ--KVRTLSRWRGHLVE 142

  Fly   169 AVAFNPYHGNESSTGPILLGTSRGLIFETELNPAADGHVQR------KQLYDLGLGRPKYPITGL 227
            ::.:|...|||:||||||:||::|||||.|::.:..|....      :.::.|.......|:..|
 Frog   143 SIGWNKLLGNETSTGPILVGTAQGLIFEAEISASEGGLFSTNPDQYFRNIHTLEEETGPVPVCCL 207

  Fly   228 KLLRVPNSSRYIIVVTSPECIYTFQETLK--AEERSLQAIFAGYVSGVQEPHCEERKTDLTFSQL 290
            ::.| ...:|:.::.|:|:.::.|...:.  .|::....:|...|..:  |..:|....|.:|::
 Frog   208 EINR-GYENRFSVIATTPKRLFQFAAKIPEGTEQQGFTPLFNQPVDDL--PSIQEFPGSLGYSEI 269

  Fly   291 RFFAPPNSKYPKQWAWLCGEGIRVGELSIEANSAATLIGNTLINLDFEKTMHL-------SYGER 348
            .|:.......|..:||:.|.|:..|                  ||||.:...:       .| ..
 Frog   270 AFYTQKLRSIPSSFAWMMGNGVLYG------------------NLDFSRPDSILTDVQVWEY-PS 315

  Fly   349 RLNTPKAFVLTEYHAVLLYADHVRAICLLNQEQVYQEAFDEARVGKPLSIERDELTGSIYVYTVK 413
            .:..|.:.|||::|.:||..|.::|||:||.:.|:::.|.| :.|....:.:|...|.|:::|.:
 Frog   316 SVEKPMSIVLTQFHFLLLLPDRIKAICILNGQVVFEDVFTE-KFGPLKKMLKDPSIGQIWIHTER 379

  Fly   414 TVFNLRVTREERNVWRIYLDKGQYELATAHAAEDPEHLQLVLCQRADAAFADGSYQVAADYYAET 478
            .||...|.||.|:||::|:..|:::||.....:.||.:..||...|:..|....|..:|..||.|
 Frog   380 AVFRYHVEREPRDVWKMYMSMGKFDLAKEFCRDRPECMDTVLASEAEHCFQSKKYIESAKCYALT 444

  Fly   479 DKSFEEVCLKFMVLPDKRPIINYVKKRLSRVTTKPMETDELDEDKMNIIKALVIWLIDLYLIQIN 543
            .|.||||.|||:....:..::.|::|:||.:.:         .:|:. :..|..||.:|||..:.
 Frog   445 QKYFEEVALKFIEAKQEEALMEYLQKKLSNLKS---------SEKIQ-VTLLTTWLTELYLNHLG 499

  Fly   544 MPDKDEEWRSSW---QTEYDEFMMEAHVLSCTRQNRETVRQLIAEHADPRNMAQFAIAIGDYDEV 605
            :.:.|...||.:   :.|:..|:.......|...||.::..|:|.|.|..:|..||:.:.||:.|
 Frog   500 ILESDTSKRSFYLKARDEFRAFLSSPRNKECLFNNRTSIHDLLASHGDTEHMVYFAVLMQDYERV 564

  Fly   606 VAQQLKAECYAEALQTLINQRNPELFYKYAPELITRLPKPTVDALMAQGSRLEVEKLVPTLIIME 670
            ||...:.:.|.|||..|...::.:||||::|.|:..:|...|||.:|.|.:|:.:.|:|.|:   
 Frog   565 VAHHCQHDDYNEALNVLSKHKDEKLFYKFSPVLMQHIPTKVVDAWIAMGKKLDPKNLIPALV--- 626

  Fly   671 NREQREQTQ-----RYLEFAIYKLNTTNDAIHNFLLHLYAEHEPKLLMKYLEIQGRDESLVHYDI 730
            |..|...||     ||:|:.:|.:..|..||||:||.|||:..|..|:.|||..|.:.:.:|||:
 Frog   627 NYSQSAGTQINEAIRYMEYCVYMMKETEQAIHNYLLSLYAQFRPDSLLSYLEKAGTNANRIHYDL 691

  Fly   731 YYAHKVCTDLDVKEARVFLECMLRKWISAVDLALTFDMKLAKETASRP-SDSKIRRKLWLRIAYH 794
            .||.::|.:.....|.|.:..::..:..||||||..|:.|||..|..| .|.::::||||:||.|
 Frog   692 KYALRLCAEHGHNRACVHVYKVMELYEEAVDLALMVDVDLAKSCADLPVDDEELQKKLWLKIARH 756

  Fly   795 DIKGTNDVKKALNLLKECDLLRIEDLLPFFADFEKIDNFKEAICDALRDYNQRIQELQREMAETT 859
            .::...|||||:..|..|.||:|||:||||.||..||:||||||::|.|||:.|:||:|||.:.|
 Frog   757 VVQEEKDVKKAMVCLSSCHLLKIEDILPFFPDFVTIDHFKEAICNSLEDYNKHIEELKREMEDAT 821

  Fly   860 EQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVPLLTKEQC 924
            ....|:..::|::|.....|:.||.|..|:..||.:||::|:|||.||.|||.:.|||.|...:.
 Frog   822 LSAKRIREDMQEMRNKYGLVDPQDKCTFCDFPLLNRPFYLFLCGHMFHFDCLMQVVVPNLPSYKQ 886

  Fly   925 RRLGTLKQQLEAEVQTQAQPQSGALSKQQAM----ELQRKRAALKTEIEDILAADCLFCG-LLIS 984
            .:|..|:|:|.|.||   .|:|.:.:|::..    ::|:.|..:|.:|:||:||:|.:|| |:|.
 Frog   887 VKLEDLQQKLAAAVQ---PPKSRSQAKEEDAINLGKIQQNREQIKADIDDIVAAECAYCGELMIR 948

  Fly   985 TIDQPFVD--DWEQVNVEW 1001
            |||:||:|  .:::..:.|
 Frog   949 TIDKPFIDPQKYKEEMLSW 967

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dorNP_477286.2 Pep3_Vps18 311..464 CDD:282925 45/159 (28%)
CLH 650..797 CDD:128594 58/152 (38%)
Clathrin 654..783 CDD:279031 50/134 (37%)
Helo_like_N <828..889 CDD:305236 26/60 (43%)
RING 884..>914 CDD:238093 15/29 (52%)
vps18NP_001121454.1 Pep3_Vps18 290..430 CDD:368298 45/159 (28%)
Clathrin 615..>723 CDD:366214 38/110 (35%)
RING-H2_Vps18 845..>875 CDD:319603 16/29 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 84 1.000 Domainoid score I8171
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H13302
Inparanoid 1 1.050 519 1.000 Inparanoid score I1251
OMA 1 1.010 - - QHG53523
OrthoDB 1 1.010 - - D356334at33208
OrthoFinder 1 1.000 - - FOG0005153
OrthoInspector 1 1.000 - - oto105009
Panther 1 1.100 - - LDO PTHR23323
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3676
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.080

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