DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Ctnnd1 and p120ctn

DIOPT Version :9

Sequence 1:	XP_006234514.1	Gene:	Ctnnd1 / 311163	RGDID:	1305643	Length:	967	Species:	Rattus norvegicus
Sequence 2:	NP_001036444.1	Gene:	p120ctn / 3355143	FlyBaseID:	FBgn0260799	Length:	781	Species:	Drosophila melanogaster

Alignment Length:	789	Identity:	277/789 - (35%)
Similarity:	383/789 - (48%)	Gaps:	125/789 - (15%)

- Green bases have known domain annotations that are detailed below.

  Rat   157 PMGPDGLPVDASAVSNNYIQTLGRDFRKNGNGGPGPYVGQAGTATLPRNFHYPPDGYGRHYEDGY 221
            |.|...:...|...|.|.|:|       |......|.:.....||..|   |...|   .|||
  Fly    61 PTGVGAITKVAPHCSQNKIET-------NSTDNSIPDIENHPLATTVR---YVQAG---QYED-- 110

  Rat   222 PGGSDNYGSLSRVTRIEERY-RPSMEGYRAPSRQDVYGPQPQVRVGGSSVDLHRFHPEPY----- 280
               :..||.......|:..| ..::..|...|..:..|.|      .::..:..|...|:
  Fly   111 ---TSEYGVAGLTCGIDSEYTAEAVVPYCYTSDANYTGIQ------NTTSSIKPFSGRPFNDNIN 166

  Rat   281 GLE---DDQ----RSMGYDDLDYGMMSDYGTARRTGTPSDPRRRLRSYEDMIGEEVPPDQYYWAP 338
            |.|   |.|    :|.....|....||...|.         .:||...:|.|
  Fly   167 GAEAVADSQCRTFKSSAEFKLPQFAMSSINTV---------PQRLEEKDDYI------------- 209

  Rat   339 LAQHERGSLASLDSLRKGMPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTD 403
                 .||...:.|..:       ||.|.|.|||:.|.....|:|:|||||||||||.:|..|..
  Fly   210 -----EGSENDICSTMR-------WRDPNLSEVISFLSNPSSAIKANAAAYLQHLCYMDDPNKQR 262

  Rat   404 VRKLKGIPILVGLLDHPKKEVHLGACGALKNISFGRDQD-NKIAIKNCDGVPALVRLLRKARDMD 467
            .|.|.|||.||.||.:...|:|..|||||:|:|:||..| ||..|||..|:.|||.||.::::.:
  Fly   263 TRSLGGIPPLVRLLSYDSPEIHKNACGALRNLSYGRQNDENKRGIKNAGGIAALVHLLCRSQETE 327

  Rat   468 LTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWERE-PNEDCKPRHIEWESVLTNTA 531
            :.|::||.|||:||.:.:|..|:|.||.|:...||.|||||:.. ..|.|      :.:|..|.:
  Fly   328 VKELVTGVLWNMSSCEDLKRSIIDEALVAVVCSVIKPHSGWDAVCCGETC------FSTVFRNAS 386

  Rat   532 GCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHR-EIP 595
            |.||||||....||..||.|:.||:.|:::|:..|.:.:..:|.||||||:||||||:... :.|
  Fly   387 GVLRNVSSAGEHARGCLRNCEHLVECLLYVVRTSIEKNNIGNKTVENCVCILRNLSYRCQEVDDP 451

  Rat   596 QAERYQEALPS--VANSTGPHAASCFGAKKGKDEWFSRGKKPTEDPAND---TVDFPKRT----S 651
            ..:::....|.  :.:|:......|||..|.|.|      ....|..|:   :.|:.|.:    .
  Fly   452 NYDKHPFITPERVIPSSSKGENLGCFGTNKKKKE------ANNSDALNEYNISADYSKSSVTYNK 510

  Rat   652 PARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 716
            ..:|||.|:|||||:.|:|||:....|..|||:|||||||.|..|.....||:.:|:||.|..:.
  Fly   511 LNKGYEQLWQPEVVQYYLSLLQSCSNPETLEAAAGAIQNLSACYWQPSIDIRATVRKEKGLPILV 575

  Rat   717 DLLTSEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVVSILNT 781
            :||..|.:|||.|.:.||||||:|.||||||||:|:.:||:.||.|......|.|:||:.::|.|
  Fly   576 ELLRMEVDRVVCAVATALRNLAIDQRNKELIGKYAMRDLVQKLPSGNVQHDQNTSDDTITAVLAT 640

  Rat   782 INEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEK----EVRAAALVLQTIWGYKELRKPLEKE 842
            |||||.:|.|.::.|.::.||::|:.|.|   |.||    .::.|:.||.|:|.:.|||...:|.
  Fly   641 INEVIKKNPEFSRSLLDSGGIDRLMNITK---RKEKYTSCVLKFASQVLYTMWQHNELRDVYKKN 702

  Rat   843 GWKKSDF----------------QVN--LNNASRSQSSHSYDDSTL-----PLIDRNQKSDKKPD 884
            |||:.||                .||  ||....||....|:|.|:     .|...|..|.....
  Fly   703 GWKEQDFVSKHFTAHNTPPSSPNNVNNTLNRPMASQGRTRYEDRTIQRGTSTLYSANDSSGAVMS 767

  Rat   885 REEIPMSNM 893
            .|...:|.|
  Fly   768 NESAMLSEM 776

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Ctnnd1	XP_006234514.1	ARM	363..481	CDD:237987	61/118 (52%)
		armadillo repeat	368..393	CDD:293788	14/24 (58%)
		armadillo repeat	401..437	CDD:293788	18/35 (51%)
		armadillo repeat	444..479	CDD:293788	15/34 (44%)
		armadillo repeat	486..537	CDD:293788	20/51 (39%)
		ARM	524..609	CDD:237987	34/87 (39%)
		armadillo repeat	656..693	CDD:293788	23/36 (64%)
		ARM	657..759	CDD:237987	55/101 (54%)
		armadillo repeat	703..737	CDD:293788	15/33 (45%)
		armadillo repeat	793..829	CDD:293788	12/39 (31%)
p120ctn	NP_001036444.1	ARM	227..341	CDD:237987	58/113 (51%)
		armadillo repeat	227..252	CDD:293788	14/24 (58%)
		armadillo repeat	260..296	CDD:293788	18/35 (51%)
		armadillo repeat	304..339	CDD:293788	15/34 (44%)
		ARM	307..442	CDD:237987	61/140 (44%)
		armadillo repeat	347..392	CDD:293788	19/50 (38%)
		armadillo repeat	515..556	CDD:293788	24/40 (60%)
		ARM	516..643	CDD:237987	65/126 (52%)
		armadillo repeat	562..596	CDD:293788	15/33 (45%)
		armadillo repeat	601..641	CDD:293788	19/39 (49%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166343356
Domainoid	1	1.000	109	1.000	Domainoid score	I6212
eggNOG	1	0.900	-	-		E1_KOG1048
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	406	1.000	Inparanoid score	I1836
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D125744at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	LDO	PTHR10372
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X765
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	9	8.900