DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and Ir75b

DIOPT Version :10

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster


Alignment Length:421 Identity:79/421 - (18%)
Similarity:142/421 - (33%) Gaps:117/421 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   589 DGKWGTLENGKWN------GLIADLVNRKTDMVLTSLMINTER----EAVVDFSEPFMETGIAIV 643
            |.|:..:...:|:      |:|.||:..|.|:.:...:.:.:|    :.:..|| .|.|..:...
  Fly   240 DCKFKYIFRDRWSDGNATGGMIGDLILDKADLAIAPFIYSFDRALFLQPITKFS-VFREICMFRN 303

  Fly   644 VAKRTGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFLF------EWLSPSGYDMKLYLQNTNV 702
            ....:..:|.|.||:||....|:...::.:.|...:...|      :| .||       |..:.:
  Fly   304 PRSVSAGLSATEFLQPFSGGVWLTFALLLLLAGCLLWVTFILERRKQW-KPS-------LLTSCL 360

  Fly   703 TPYRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLA-----IYTANLAAFMI 762
            ..:.....:..||             :||....|.     |.||::..:     .||:.:.:.::
  Fly   361 LSFGAGCIQGAWL-------------TPRSMGGRM-----AFFALMVTSYLMYNYYTSIVVSKLL 407

  Fly   763 ---TREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTIHKYFNVMHNYMRQYNKTS---- 820
               .:........|.||.|          ..|..|      |:         |.|.|.:||    
  Fly   408 GQPIKSNIRTLQQLADSNL----------DVGIEP------TV---------YTRIYVETSEEPD 447

  Fly   821 VADGVAAVLNGNLDS--FIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGL-------------- 869
            |.|.....:.|:..|  .|:..|....|..:|::..:...|   ..|||..              
  Fly   448 VRDLYRKKVLGSKRSPDKIWIPTEAGVLSVRDQEGFVYITG---VATGYEFVRKHFLAHQICELN 509

  Fly   870 ------------AFSRNSKYVQMFNKRLLEFRANGDLERLRRYWMTGT--CRPGKQEHKSSDPLA 920
                        ..::.|.|.::.....|.....|...:..|.||...  |    .:|..:..:.
  Fly   510 EIPLRDASHTHTVLAKRSPYAELIKLSELRMLETGVHFKHERSWMETKLHC----YQHNHTVAVG 570

  Fly   921 LEQFLSAFLLLMAGILLAALLLLLEHVYFKY 951
            ||.....|::|:..|:|...:|.||.::.::
  Fly   571 LEYAAPLFIILLGAIILCMGILGLEVIWHRH 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..485 CDD:380601
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 69/376 (18%)
Ir75bNP_001137966.2 Lig_chan-Glu_bd <235..283 CDD:463166 9/42 (21%)
Periplasmic_Binding_Protein_Type_2 <259..>325 CDD:473866 17/66 (26%)
Lig_chan 343..584 CDD:459656 52/298 (17%)
Blue background indicates that the domain is not in the aligned region.

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