DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and GLR2.4

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_001328410.1 Gene:GLR2.4 / 829299 AraportID:AT4G31710 Length:912 Species:Arabidopsis thaliana


Alignment Length:997 Identity:179/997 - (17%)
Similarity:346/997 - (34%) Gaps:296/997 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 GGSLSKGAAANKEQLNIGLIAPHTNFGKREYLRSINNAVTGLTKTRGAKLTFLKDYSFEQKNIHF 151
            |..|.||.....:.:|:|::...........|.:||.:::....:|....|.|            
plant    41 GVKLGKGQNTTIQVINVGVVTDVGTTASNLSLLAINMSLSDFYSSRPESRTRL------------ 93

  Fly   152 DMMSLTPSPTAILSTLCKEFLRVNVSAILYMMNNEQF-----GHSTASAQYFLQLAGYLGIPVIS 211
             :::...|...::..         .:|.|.::.|::.     ..:|..|.:.:::.....:|:||
plant    94 -LLNFADSRDDVVGA---------AAAALDLIKNKEVKAILGPRTTMQASFVIEVGQKSQVPIIS 148

  Fly   212 WNADNSGLERRASQSTLQLQLAPSIEHQSAAMLSILERYKWHQFSVVTSQIA-------GHDDFV 269
            ::|.:..|:  :.:|....:.......|..|:..|::.:.|.:...|....|       |..|.:
plant   149 FSATSPFLD--SGRSPYFFRSTYDDSSQVQAISEIIKVFGWREVVPVYENNAFGEGIMPGLTDAL 211

  Fly   270 QAVRERVAEMQEHFKFTILNSIVVTRTS-DLMELVNSEARVMLLYATQTEAITILRAAEEMKLTG 333
            ||:..|:.     ::..|..:......| ||::|:....||.:::..:..|..:...|.|..|..
plant   212 QAINIRIP-----YRTVISPNATDDEISVDLLKLMTKPTRVFVVHMNRFLASRVFSKARETGLMK 271

  Fly   334 ENYVWVVSQSVIE----KKDAHSQFPVGMLGV--HFDTSS--AALMNEISNAIKIYS---YGVEA 387
            :.|.|:::..||:    ......:...|::|:  ||..|.  ....:.::.|..:..   ||:.|
plant   272 QGYAWILTNGVIDHLVLMNGTDIEAMQGVIGIRTHFPISEELQTFRSRLAKAFPVSELNIYGLRA 336

  Fly   388 Y-----------------LTDPANRDRRLT-TQSLSCEDEGRGRWDNGEIFFKYLRNVS------ 428
            |                 ||......|.:: .::||..:.|.          |.:|::|      
plant   337 YDATTALAMAVEEAGTTNLTFSKMDGRNISDLEALSVSEYGP----------KLIRSLSQIQFKG 391

  Fly   429 IEGDLNKPNIEFTADGDLRSAELKIMNLRPS--------ANNKNLVWE---EIGVWKSWETQKLD 482
            :.||.:      ..||.|.::..:|:|:...        ..:|.||.:   ..|..:::.:.|..
plant   392 LSGDYH------FVDGQLHASVFEIVNVIDGGGILVGFWTQDKGLVKDLSPSSGTTRTFSSWKNH 450

  Fly   483 IRDIAWPGNSHAPPQG--VP---EKFHLKI---TFLEEAPYINLSPADPVSGKCLMDRGVLCRVA 539
            :..|.|||.:...|:|  :|   ::..:.:   ||    |.......||::              
plant   451 LNPILWPGITLTVPKGWEIPTNGKELQIGVPVGTF----PQFVKVTTDPLT-------------- 497

  Fly   540 ADHEMAADIDVGQAHRNESFYQCCSGFCIDLLEKFAEELGF--TYELVRVEDGKWGTLENGKWNG 602
              ||...                 :|||||..|...:.:.:  ::..:...|      ::||.|.
plant   498 --HETIV-----------------TGFCIDFFEAVIQAMPYDVSHRFIPFGD------DDGKTND 537

  Fly   603 LIADLVNRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIVVAKRTGII-SPTAFLEPFDTASW- 665
                          |:::.|  |.:.|||:.|:..:|:.:||..:..:. |...|.:|.....| 
plant   538 --------------TTILAN--RSSYVDFTLPYTTSGVGMVVPLKDNVARSSLIFFKPLTPGLWG 586

  Fly   666 MLVGIVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNVT-PYRFSLFRTYWLVWAVLFQAAVHVDS 729
            |.:|  :.....|::::.|           :..|:..| |.::.:...:|..::::      |.:
plant   587 MTLG--SFFVVGFVVWILE-----------HRVNSEFTGPPQYQISTMFWFAFSIM------VFA 632

  Fly   730 PR----GFTSRFMTNVWALFAVVFLAIYTANLAAFMITRE------------------------- 765
            ||    .||:|.:...|....:|....|||:|::.:.|::                         
plant   633 PRERVMSFTARVVVITWYFIVLVLTQSYTASLSSLLTTQQLNPTETSIKNVLAKGGPVAYQRDSF 697

  Fly   766 ---EFHEFSGLNDSRLVHPFSHKP---------------SFKFGTIPYSHTDSTIHKYFNVMHNY 812
               :..| ||..:|||| ||:...               |..|..:||...         .:..|
plant   698 VLGKLRE-SGFPESRLV-PFTSPEKCEELLNKGPSKGGVSAAFMEVPYVRV---------FLGQY 751

  Fly   813 MRQYNKTSVADGVAAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAFSRNSKY 877
            .::|....|.                                       :.:.|:|..|...|..
plant   752 CKKYKMVEVP---------------------------------------FDVDGFGFVFPIGSPL 777

  Fly   878 VQMFNKRLLEFRANGDLERLRRYWMTGTCRPGKQEHKSSDPLALEQF----LSAFLLLMAGILLA 938
            |...::.:|:...:....:|...|.....:.......:.||.....|    |.:||||.......
plant   778 VADVSRAILKVAESNKATQLETAWFKNIDKTCPDPMNNPDPNPTVSFRKLSLDSFLLLFVAAATV 842

  Fly   939 ALLLLLEHVYFKYIRKRLAKKD 960
            ..|.||:.|....|:.|:...|
plant   843 CTLALLKFVICFLIQNRIILND 864

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 79/449 (18%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 76/460 (17%)
Lig_chan 665..928 CDD:278489 50/315 (16%)
GLR2.4NP_001328410.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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