DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and grid2

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:975 Identity:231/975 - (23%)
Similarity:384/975 - (39%) Gaps:230/975 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 SAQYFLQLAGYLGIPVISWNADNSGLER-------RASQSTLQLQLAPSIEHQSAAMLSILERYK 251
            ||.....||..:.||.:......:|..|       ||......|.:.|.: :.:..:..::..|.
Zfish   101 SAGSLQSLADAMHIPHLFIQRAPAGTPRSSCPPTTRAQPDDYTLFVRPPV-YLNDVIFQVVMEYT 164

  Fly   252 WHQFSV---VTSQIAGHDDFV-----QAVRERVAEMQEHFKFTILNSIVVTRTSDLMELVNSEAR 308
            |.:|.:   ....|.|.::|:     |.:...:.:::.:....|.......|..:|....::..|
Zfish   165 WQKFIIFYDTDYDIRGIENFLDQTSQQGMDVSLQKVESNINMMITGMFRTMRVEELHRYRDTLRR 229

  Fly   309 VMLLYATQTEAITILRAAEEMKLTGENYVWVVSQSVIEKKD--------------AHSQFPVGML 359
            .:|..:..| |...:....|..|...:..|::....|...|              ....||:.. 
Zfish   230 AVLFMSPAT-AKAFITEVVETNLVAFDCQWIIINEEISDMDVQELVMKSIGRLTLVRQTFPLPQ- 292

  Fly   360 GVHFDTSSAALMN-------------------EISNAIKIYSYGVEAYLTDPANR---DRRL-TT 401
                :||...:.|                   ||:|.   |.|.....|.:..:|   ||:. :.
Zfish   293 ----NTSQRCVRNNHRINTSLCDPKDPKAQMLEITNR---YIYDTVLLLANTFHRKLEDRKWHSM 350

  Fly   402 QSLSCEDEGRGRWDNGEIFFKYLRNVSIEGDLNKPNIEFTADGDLRSAELKIMNLRPSANNKNLV 466
            .||||..:|...|..|:...:.::...:.|..:.  :||..:|                :|.|:.
Zfish   351 ASLSCIRKGSKPWQGGKSMLETVKKGGVSGLTSL--LEFNDNG----------------SNPNIH 397

  Fly   467 WEEIGVWKSWETQKLDIRDIAWPGNSHAPPQGVPEKFHLKITFLEEAPYINLSPADPVSG--KCL 529
            :|.:|      |...:.|.           :||.                .|:..||:.|  ..|
Zfish   398 FEILG------TNYGEDRG-----------RGVS----------------RLATWDPIHGLNG
TL 429

  Fly   530 MD-------RGVLCRVAADHE----MAADIDVGQAHRNESFYQCCSGFCIDLLEKFAEELGFTYE 583
            .|       |||:.||....|    |.::..:|:..:    ||   ||.||:|:..|..|||.||
Zfish   430 TDRKLENNMRGVVLRVVTVLEEPFVMVSENVLGKPKK----YQ---GFSIDVLDALANYLGFKYE 487

  Fly   584 LVRVEDGKWGTLE-NGKWNGLIADLVNRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIVVAKR 647
            :....|.|:|:.: :|.|||||.:||.::.|:.|::|.|..|||:||||:..:|:..:.:::.|.
Zfish   488 IYVAPDHKYGSQQADGTWNGLIGELVFKRADVGLSALTITPERESVVDFTTRYMDYSVGVLLRKA 552

  Fly   648 TGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNVTPYRFSLFRT 712
            ...:...|.|.|||.:.|..:....:...| :::|..||:|.    :|.:.:.:.|    :|:.:
Zfish   553 ERTVDMFACLAPFDLSLWACIAGTVLLVGT-LVYLLNWLNPP----RLPMGSVSST----TLYNS 608

  Fly   713 YWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANLAAFM-ITREEFHEFSGLNDS 776
            .|.|:....|....|.... ..:|.|..||.|||::.::.||||||||: |:|.|       |..
Zfish   609 MWFVYGSFVQQGGEVPYTT-LATRMMMGVWWLFALIVISSYTANLAAFLTISRIE-------NSI 665

  Fly   777 RLVHPFSHKPSFKFGTIPYSHTDSTIH-----KYFN-----VMHNYM-RQYNKTSVA-------- 822
            :.:...:.:....:||:    .||.::     |..|     .|::.| |..|:|..|        
Zfish   666 QSLQDLAKQTDLPYGTV----LDSAVYDQVRSKGMNPFERDPMYSQMWRMINRTGGAENNVEESK 726

  Fly   823 DGVAAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAFSRNSKYVQMFNKRLLE 887
            :|:..|..|.. :|::|..||:|:...||||.|.||.:..|..|||:|....|.|..:|::|:||
Zfish   727 EGIRKVKYGRF-AFVWDAAVLEYVAINDEDCSLYTVSNNVADRGYGMAMQHGSPYRDIFSQRILE 790

  Fly   888 FRANGDLERLRRYWM-----------TGTCRPGKQEHKSSDPLALEQFLSAFLLLMAGILLAALL 941
            .:.|||::.|:..|.           .||       .||...|.:..|...|.:|.||::|:.|:
Zfish   791 LQQNGDMDILKLKWWPRDSPCDLYSPVGT-------RKSGSALDIHSFAGVFFVLAAGVVLSCLI 848

  Fly   942 LLLEHVYFKYIRKRLAKKDGGHCCALISLSMGKSLTFRGAVFEATEILKKHRCNDPIC----DTH 1002
            ..:|..:.:....|:..|:......|..|                    .||.|. :|    ..|
Zfish   849 ATVETWWTRRKGSRVPSKEDDKEIDLEHL--------------------HHRVNS-LCTEDESPH 892

  Fly  1003 LWKVKHELDMSRLRVRQLEKVMDKHGIKAPQLRLASSSDLLNHHHLKER--PPLLGNLSLAASAQ 1065
            .......:|::.|         |...:.|.:..|...||..|.|.....  |..:..||.:.||:
Zfish   893 KQFSTSSIDLTPL---------DMDSLPAARQALEQISDFRNTHITTTTFIPEQIQTLSRSLSAK 948

  Fly  1066  1065
            Zfish   949  948

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 62/347 (18%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 133/450 (30%)
Lig_chan 665..928 CDD:278489 81/293 (28%)
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..427 CDD:107386 68/386 (18%)
ANF_receptor 42..404 CDD:279440 60/336 (18%)
PBP2_iGluR_delta_2 440..806 CDD:270449 124/394 (31%)
Lig_chan 568..841 CDD:278489 83/301 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591521
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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