DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and GluRIB

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster


Alignment Length:1096 Identity:214/1096 - (19%)
Similarity:395/1096 - (36%) Gaps:324/1096 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 TNGGGSLSKGAAAN---KEQLNIGLIAPHTNFGKREYLRSINNAVTGLTKTRGAKLTFLKDYSFE 145
            :.|||....|.:|.   .|::.:|.|...                 |..:.:.|....:.:::..
  Fly    22 SGGGGGSGVGVSAQPSLTEKIPLGAIFEQ-----------------GTDEVQSAFKYAMLNHNLN 69

  Fly   146 QKNIHFDMMSL-----TPSPTAILSTLCKEFLRVNVSAILYMMNNEQFG--HSTASAQYFLQLAG 203
            ..:..|::.:.     |.....:...:|.:|.| .|.::|..::.:.|.  ||.::.        
  Fly    70 VSSRRFELQAYVDVINTADAFKLSRLICNQFSR-GVYSMLGAVSPDSFDTLHSYSNT-------- 125

  Fly   204 YLGIPVIS-WNADNSGLERRASQSTLQLQLAPSIE---HQSAAMLSILERYKWHQFSVVTSQIAG 264
             ..:|.:: |..     |:..:.|:..|..|.|:.   ||  |::..::.|.|.:...:..   .
  Fly   126 -FQMPFVTPWFP-----EKVLTPSSGFLDFALSMRPDYHQ--AIIDTIQFYGWRKIIYLYD---S 179

  Fly   265 HDDF--VQAVRERVAEMQEHFKFTILNSIVVTRTSDLMELVNS--------EARVMLLYATQTEA 319
            ||..  :|.:.:.:....|.|:..::..|  :..|..:|.:::        ...::|...|:...
  Fly   180 HDGLLRLQQIYQGLRPGNESFQVELVKRI--SNVSMAIEFLHTLEQIGRFENKHIVLDCPTEMAK 242

  Fly   320 ITILRAAEEMKLTGENYVWVVSQSVIEK----------------------------------KDA 350
            ..:::...:::|....|.:::|..|::.                                  |..
  Fly   243 QILIQHVRDLRLGRRTYHYLLSGLVMDDRWESEIIEFGAINITGFRIVDTNRRLVREFYDSWKRL 307

  Fly   351 HSQFPVGMLGVHFDTSSAALM-----------NEI---------------SNAIKI--------- 380
            ..|..|| .|....::.||||           |:|               |..:.:         
  Fly   308 DPQMSVG-AGRESISAQAALMYDAVFVLVEAFNKILRKKPDQFRNNVQRRSQTLMVAQAAASTSS 371

  Fly   381 --YSYGVE-----------AYLTDPANRDRRLTTQSLSCEDEGRG---RWDNGEIFFKYLRNVSI 429
              |:|...           .:....:.....:.:::|.| :..:|   .|::|:...:|||.|.|
  Fly   372 DGYNYSASGGGGGNGGAGGGFAGSDSGGSGGMASRALDC-NTAKGWVNAWEHGDKISRYLRKVEI 435

  Fly   430 EGDLNKPNIEFTADGDLRSAELKIMNLRPSANNKNLVWEEIGVWKSWETQKLDIRDIAWPGNSHA 494
            ||...  :|:|..||...:..|.::.:     ..|....::..|                 |..|
  Fly   436 EGLTG--DIKFNDDGRRVNYTLHVVEM-----TVNSAMVKVAEW-----------------NDDA 476

  Fly   495 PPQGVPEKF-----HLK--------ITFLEEAPYINLSPADPVSGKCLMDRGVLCRVAADHEMAA 546
            ..|.:..|:     |::        :|.:.|.|||                 :|.:||...::  
  Fly   477 GLQPLNAKYVRLRPHVEFEKNRTYIVTTVLEEPYI-----------------MLKQVAFGEKL-- 522

  Fly   547 DIDVGQAHRNESFYQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTLE---NGKWNGLIADLV 608
                   |.|..|    .|:|.||.:..|:|||..|||..|:||.:|:.:   :|.|:|::.:||
  Fly   523 -------HGNNRF----EGYCKDLADLLAKELGINYELRLVKDGNYGSEKSSAHGGWDGMVGELV 576

  Fly   609 NRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIVVAK----RTGIISPTAFLEPFDTASWMLV- 668
            .::.|:.:.::.|..|||.|:|||:|||..||:|::.|    ..|:.|   |:.|.....|:.| 
  Fly   577 RKEADIAIAAMTITAERERVIDFSKPFMSLGISIMIKKPVKQTPGVFS---FMNPLSQEIWVSVI 638

  Fly   669 -GIVAIQAATFMIFLF---EWL------------SPSGYDMKLYLQ------------------- 698
             ..:.:....|.:..|   ||.            .|..:..:|..|                   
  Fly   639 FSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAHHEQLANQQPPGIIGGAPLPAPPGPPT 703

  Fly   699 -------------------------NTNVTPYRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFM 738
                                     :::.....||::.::|...|...|....: |||..:.|..
  Fly   704 PGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNSFWFSLAAFMQQGCDL-SPRSVSGRIA 767

  Fly   739 TNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVHPFSH------KPSFKFGTIPYSH 797
            ...|..|.::.::.||||||||            |...|:|.|.:.      :...::||:.:..
  Fly   768 AASWFFFTLILISSYTANLAAF------------LTVERMVTPINSPEDLAMQTEVQYGTLLHGS 820

  Fly   798 TDSTIHKYFNVMHNYMRQYNKT-------SVADGVAAVLNG-NLDSFIYDGTVLDYLVAQDEDCR 854
            |.....:....:||.|.:|..:       :..:|:..|.|. ...:.:.:....:|:.|: |.|.
  Fly   821 TWDFFRRSQIGLHNKMWEYMNSRKHVFVPTYDEGIKRVRNSKGKYALLVESPKNEYVNAR-EPCD 884

  Fly   855 LMTVGSWYAMTGYGLAFSRNSKYVQMFNKRLLEFRANGDLERLRRYWM--TGTCRPGKQEHKSSD 917
            .|.||......|:|:|....|......|..:|..:.||:|.:||..|.  ...|...|....|..
  Fly   885 TMKVGRNLDTKGFGIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYEKAECSTHKDGETSHS 949

  Fly   918 PLALEQFLSAFLLLMAGILLAALLLLLEHVYFKYIRKRLAKKDGGHCCALISLSMG 973
            .|:|......|.:|:.|:|::..:.:||:. |:....|.|....|     :.|.||
  Fly   950 ELSLSNVAGIFYILIGGLLVSVFVAILEYC-FRSRDSRSASSGSG-----MGLGMG 999

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 74/496 (15%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 115/502 (23%)
Lig_chan 665..928 CDD:278489 66/339 (19%)
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 75/499 (15%)
ANF_receptor 55..461 CDD:279440 68/436 (16%)
PBP2_iGluR_AMPA 497..938 CDD:270433 112/487 (23%)
Lig_chan 632..967 CDD:278489 68/348 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462558
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.890

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