DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and KaiR1D

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster


Alignment Length:863 Identity:190/863 - (22%)
Similarity:333/863 - (38%) Gaps:201/863 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 LRVNVSAILYMMNNEQFG-HSTASAQYFLQLAGYLGIPVIS--WNADNSGLERRASQSTLQLQLA 233
            |.:.|:||        || .|:.:|.:...:...:.||.:.  |       :.|..:.:..:.|.
  Fly    89 LNIGVAAI--------FGPQSSHTASHVQSICDNMEIPHLENRW-------DYRLRRESCLVNLY 138

  Fly   234 PSIEHQSAAMLSILERYKWHQFSVVTSQIAGHDDFVQAVRERVAEMQEHFKFTILN--SIVVTRT 296
            |.....|.|.:.|:..:.|..|:::.....|           :..:||..|...:.  .|.|.:.
  Fly   139 PHPNTLSKAYVDIVRHWGWKTFTIIYENNDG-----------IVRLQELLKAHGMTPFPITVRQL 192

  Fly   297 SD------LMELVNSEARVMLLYATQTEAI-TILRAAEEMKLTGENYVWVVSQSVIEKKDAHS-- 352
            ||      |::.:.:.|...::....||.| .:|:.|:::.:..:.:.::|:     ..|.|:  
  Fly   193 SDSGDYRPLLKQIKNSAEAHIVLDCSTERIHEVLKQAQQIGMMSDYHSYLVT-----SLDLHTVN 252

  Fly   353 --QFPVGMLGVHFDTSSAALMNE--ISNAIKIYSYGVEAYLTDPANRDRRLTT------------ 401
              :|..|...:    :...|:||  :|:.::.:|...:..|     |...|||            
  Fly   253 LDEFRYGGTNI----TGFRLINEKIVSDVVRQWSIDEKGLL-----RSANLTTVRSETALMYDAV 308

  Fly   402 ------------------QSLSCEDEGRGRWDNGEIFFKYLRNVSIEGDLNKPNIEFTADGDLRS 448
                              ..:||  :|:..|.:|.....|::.|.::|..|.  |:|...|....
  Fly   309 HLFAKALHDLDTSQQIDIHPISC--DGQSTWQHGFSLINYMKIVEMKGLTNV--IKFDHQGFRTD 369

  Fly   449 AELKIMNLRPSANNKNLVWEEIGVWKSWETQKLDIRDIAWPGNSHAPPQGV--PEKFHLK----- 506
            ..|.|:.|.|:...|      ||.|.|                  ..|.|:  ...|..|     
  Fly   370 FMLDIVELTPAGIRK------IGTWNS------------------TLPDGIN
FTRTFSQKQQEIE 410

  Fly   507 ---------ITFLEEAPY-INLSPADPVSGKCLMDRGVLCRVAADHEMAADIDVGQAHRNESFYQ 561
                     :|.:...|| :....|.|:||                             |:.|  
  Fly   411 ANLKNKTLVVTTILSNPYCMRKESAIPLSG-----------------------------NDQF-- 444

  Fly   562 CCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTLE--NGKWNGLIADLVNRKTDMVLTSLMINTE 624
              .|:.:||:.:.::.|||.|::..|.||.:|:|.  .|:|||:|.:|:.::.|:.:..|.|..|
  Fly   445 --EGYAVDLIHEISKSLGFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFE 507

  Fly   625 REAVVDFSEPFMETGIAIVVAKRTGIISPT---AFLEPFDTASWMLVGIVAIQAATFMIFLFEWL 686
            ||..|||:.|||..|::|:.  |..|..|.   :||.|.....|:.:. .|....:.::|:....
  Fly   508 REQAVDFTTPFMNLGVSILY--RKPIKQPPNLFSFLSPLSLDVWIYMA-TAYLGVSVLLFILAKF 569

  Fly   687 SPSGYDMKLYLQ-NTNVTPYRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFL 750
            :|  |:...|.. :......:|:|....|.....|.|..... .|:..::|.:..:|..|.::.:
  Fly   570 TP--YEWPAYTDAHGEKVESQFTLLNCMWFAIGSLMQQGCDF-LPKALSTRMVAGIWWFFTLIMI 631

  Fly   751 AIYTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHT-----DSTIHKY---FN 807
            :.||||||||:.............|      .:.:...|:|.:....|     ||.|..|   ::
  Fly   632 SSYTANLAAFLTVERMDSPIESAED------LAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWS 690

  Fly   808 VMHNYMRQYNKTSVADGVAAVLNGNLD-SFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAF 871
            .|.:........|..:||..|..|... :|:.:.|.::|:.  :.:|.|..||.......||:|.
  Fly   691 FMESARPSVFTASNGEGVERVAKGKGSYAFLMESTSIEYVT--ERNCELTQVGGMLDTKSYGIAT 753

  Fly   872 SRNSKYVQMFNKRLLEFRANGDLERLRRYWMT-----GTCRPGKQEHKS-SDPLALEQFLSAFLL 930
            ..||.|....|..:|:.:..|.|..|:..|..     |.||....:..| ::.|.|......|::
  Fly   754 PPNSPYRTAINSVILKLQEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVV 818

  Fly   931 LMAGILLAALLLLLEHVY 948
            ||.|:.:|.::.:.|.|:
  Fly   819 LMGGMGVACVIAVCEFVW 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 70/365 (19%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 107/440 (24%)
Lig_chan 665..928 CDD:278489 62/278 (22%)
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 72/375 (19%)
ANF_receptor 42..378 CDD:279440 63/332 (19%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 103/416 (25%)
Lig_chan 547..823 CDD:278489 65/287 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.960

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