DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and Ir85a

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster


Alignment Length:755 Identity:135/755 - (17%)
Similarity:249/755 - (32%) Gaps:272/755 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   289 NSIVVTRTSDLMELVNSEARVMLLYA---TQT---EAITILRAAEEMKLTGEN------------ 335
            :|||:.:.|.::    .:||:.:|:.   .||   ....||:...:..::.:|            
  Fly    33 SSIVMVKMSQIL----CKARIKVLFVYFENQTSHEHTGQILKEVTKCDISNQNTPLEAVKDDGIL 93

  Fly   336 -YVWVVSQ--------SVIEKKDA--HSQFPVGMLGVHFDTSSAALMNE---------ISNAIKI 380
             |:.:::.        |:|.||.|  |... |.:|....||.|.|.|..         :.|.:.:
  Fly    94 MYMVMITTNISQPLELSLIRKKSAAKHRSH-VFLLVRDADTVSDAWMRASFRQFWKIWLLNIVIL 157

  Fly   381 YSYGVEAYLTDPANRDRRLTTQSLSCEDEGRGRWDNGEIFFKYLRNVSIEGDLNKPNIEFTADGD 445
            |.            ||.||                |...:..::.|..|..| ||||       :
  Fly   158 YW------------RDGRL----------------NAYRYNPFMDNYLIPVD-NKPN-------E 186

  Fly   446 LRSAELKIMNLRPSANNKNLVWEEIGVWKSWETQKLDIRDIAWPGNSHAPPQG-----VPEKFHL 505
            :.:.|.......|:...|.|   .:.::|.      |:|.|.|...:.....|     |.|:.:.
  Fly   187 VPTLEQLFPKTIPNMQRKPL---RMCIYKD------DVRAIFWRQGTILGTDGLLAAYVAERLNA 242

  Fly   506 KITFLEEAPYINLSPADPVSGKCLMDRGVLCRVAADHEMAADIDVGQAHRNESFYQCCSGFCIDL 570
            .:.......|.|                        |.:::||         .|.:....: :|:
  Fly   243 TMMITRPHSYNN------------------------HNLSSDI---------CFLEVAKEY-VDV 273

  Fly   571 LEKFAEELGFTYELVRVEDGKWGTLENGKWNGLIADLVNRKTDMVLTSLMINTEREAVVDFSEPF 635
                |..:.|                      |:.|...::.:    |.:.:|..:         
  Fly   274 ----AMNIRF----------------------LVPDTFRKQAE----STVSHTRDD--------- 299

  Fly   636 METGIAIVVAKRTGIISPTAF--LEPFDTASWMLVGIVAIQAATFMIFLFEWLSPSG-YDMKLY- 696
                :.::|.|..  .:||.:  ...|.:..|.|: :|::..|.  :|.:...|..| ..|:|: 
  Fly   300 ----LCVIVPKAK--TAPTFWNIFRSFGSLVWALI-LVSVLVAN--VFCYILKSEVGRVPMQLFA 355

  Fly   697 ----LQNTNVTP-YRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTAN 756
                :..|.:.| :...||..:||.:.:|..:|                            :..|
  Fly   356 GALTMPMTQIPPNHSIRLFLIFWLYFGLLICSA----------------------------FKGN 392

  Fly   757 LAAFMITR---EEFHEFSGLNDSR---LVHPFSHKPSFKFGTIPYSHTDSTIH---------KYF 806
            |.:.|:.:   .:.::...|..|.   ::.|...|....|.|:.:.| :|.|.         :.:
  Fly   393 LTSMMVFQPYLPDINQLGALARSHYHIIIRPRHVKHIQHFLTLGHKH-ESRIREQMLEVSDTQMY 456

  Fly   807 NVMHN------YMRQYNKTSVADGVAAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMT 865
            .:|.|      |:.:|:        .|....|....::.|..|.:|:   ..| |:...:.| :.
  Fly   457 EMMRNNDIRFAYLEKYH--------IARFQVNSRVHMHLGRPLFHLM---NSC-LVPFHAVY-IV 508

  Fly   866 GYGLAFSRNSKYVQMFNKRLLEFRANGDLERLRRYW---------MTGTCRPGKQEHKSSDP--- 918
            .||      |.|:...:..:......|    ..|||         .:|.....::....:|.   
  Fly   509 PYG------SPYLGFLDSLIRSSHEFG----FERYWDRIMNSAFIKSGVKVVNRRRGSGNDEPVV 563

  Fly   919 LALEQFLSAFLLLMAGILLAALLLLLEHVYFKY---IRKR 955
            |.|:.|.:.|.|.:.||.:|.::|..||:...|   :.||
  Fly   564 LKLQHFHAVFALWLVGIGMACIVLAWEHLTHNYNLAVTKR 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 49/238 (21%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 68/444 (15%)
Lig_chan 665..928 CDD:278489 54/302 (18%)
Ir85aNP_649833.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463021
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.830

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