DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and Nmdar1

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster


Alignment Length:923 Identity:228/923 - (24%)
Similarity:414/923 - (44%) Gaps:142/923 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 AAANKEQLNIGLIAPHTNFGKREYLRSINNAVTGLTKTRGAKLTFLKDYSFEQKNI-----HFD- 152
            |:.|....|||.:.  :|....|:..                 |.:|..:|:|:.:     ::| 
  Fly    32 ASDNPSTYNIGGVL--SNSDSEEHFS-----------------TTIKHLNFDQQYVPRKVTYYDK 77

  Fly   153 MMSLTPSPTAILSTLCKEFLRVNVSAILYMMNNEQFGHSTASAQYFLQLAGYLGIPVISWNADNS 217
            .:.:..:|...:..:|.:.:...|.|::..........|.|:..|   .:|:..||||..::.::
  Fly    78 TIRMDKNPIKTVFNVCDKLIENRVYAVVVSHEQTSGDLSPAAVSY---TSGFYSIPVIGISSRDA 139

  Fly   218 GLERRASQSTLQLQLAPSIEHQSAAMLSILERYKWHQFSVV----------------TSQIAGHD 266
            ....:....:. |:..|...||:...|.:|..:.:.:..::                |||....|
  Fly   140 AFSDKNIHVSF-LRTVPPYYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILGRFQTTSQTYYDD 203

  Fly   267 DFVQAVRERVAEMQ---EHFKFTILNSIVVTRTSDLMELVNSEARVMLLYATQTEAITILRAAEE 328
            ..|:|..|.:.|.:   |.|            |..|:::..:::||.|:||:..:|..|.|.|.|
  Fly   204 VDVRATVELIVEFEPKLESF------------TEHLIDMKTAQSRVYLMYASTEDAQVIFRDAGE 256

  Fly   329 MKLTGENYVWVVSQSVIEKKDAHSQFPVGMLGVHFDTSSAALMNEISNAIKIYSYGVEAYLTDPA 393
            ..:|||.:||:|::..:...:.    |.|:||:..:.:.:. ...|.:::.:.:..::..::   
  Fly   257 YNMTGEGHVWIVTEQALFSNNT----PDGVLGLQLEHAHSD-KGHIRDSVYVLASAIKEMIS--- 313

  Fly   394 NRDRRLTTQSLSCEDEGRGRWDNGEIFFKYLRNVSIEGDLNKPNIEFTADGDLRSAELKIMNLRP 458
              :..:......|.|.. ..|::|:..|:||::.:|.|:..:  :.|..:||...|...::|:| 
  Fly   314 --NETIAEAPKDCGDSA-VNWESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIR- 372

  Fly   459 SANNKNLVWEEIGVWKSWETQKLDIR------DIAWPGNSHAPPQGVPEKFHLKITFLEEAPYIN 517
            ....|::|.:     .|:::.:..:|      :|.|||.....|:|:....||::..:||.|:  
  Fly   373 EQQKKHVVGK-----FSYDSMRAKMRMRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIEEKPF-- 430

  Fly   518 LSPADPVSGKCLMDRGVLCRVAADHEMAADIDV--------GQAHRNESFYQCCSGFCIDLLEKF 574
                            |..|...|.|...:.|.        ..|..||.   ||.|:|||||.:.
  Fly   431 ----------------VYVRRMGDDEFRCEPDERPCPLFNNSDATANEF---CCRGYCIDLLIEL 476

  Fly   575 AEELGFTYELVRVEDGKWG--TLENG--------KWNGLIADLVNRKTDMVLTSLMINTEREAVV 629
            ::.:.|||:|....||::|  .|.|.        :|.|||.:|||.:.||::..|.||.||...:
  Fly   477 SKRINFTYDLALSPDGQFGHYILRNNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERAEYI 541

  Fly   630 DFSEPFMETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFLFEWLSPSGYDMK 694
            :||:||...||.|:..|.:...:..:||:||....|:|| :|::.....:::|.:..||.| ..|
  Fly   542 EFSKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILV-MVSVHVVALVLYLLDRFSPFG-RFK 604

  Fly   695 LYLQNTNVTPYRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANLAA 759
            |...::| .....:|....|..|.||..:.:...:||.|::|.:..|||.||::.:|.|||||||
  Fly   605 LSHSDSN-EEKALNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAA 668

  Fly   760 FMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTIHKYFNV--MHNYMRQYNKTSVA 822
            |::......:.||:||:||.:...   :....|:..|..|....:...:  |:..|...|..:..
  Fly   669 FLVLERPKTKLSGINDARLRNTME---NLTCATVKGSSVDMYFRRQVELSNMYRTMEANNYATAE 730

  Fly   823 DGVAAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAFSRNSKYVQMFNKRLLE 887
            ..:..|..|.|.:||:|.:.|:|  ...:||.|:|.|..:..:|||:...:.|.:.......:||
  Fly   731 QAIQDVKKGKLMAFIWDSSRLEY--EASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILE 793

  Fly   888 FRANGDLERLRRYW-----MTGTCRPGKQEHKSSDPLALEQFLSAFLLLMAGILLAALLLLLEHV 947
            |..:|.:|:|.:.|     :...|   :...|:.:.|.|:.....|:|:..||.....|:::|.:
  Fly   794 FHESGFMEKLDKQWIFHGHVQQNC---ELFEKTPNTLGLKNMAGVFILVGVGIAGGVGLIIIEVI 855

  Fly   948 YFKYIRKRLAKKD 960
            |.|:..|:..:.|
  Fly   856 YKKHQVKKQKRLD 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 82/421 (19%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 127/430 (30%)
Lig_chan 665..928 CDD:278489 74/269 (28%)
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 84/426 (20%)
ANF_receptor 58..371 CDD:279440 68/341 (20%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 127/432 (29%)
HisJ 451..>558 CDD:223904 41/109 (38%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 43/137 (31%)
Lig_chan 575..838 CDD:278489 75/273 (27%)
CaM_bdg_C0 854..882 CDD:287524 4/15 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463092
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D8418at33392
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.000

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