DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and Ir76a

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster


Alignment Length:616 Identity:118/616 - (19%)
Similarity:213/616 - (34%) Gaps:140/616 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   381 YSYGVEAYLTDPANRDRRLTTQSLSCEDEGRGRWDNGEIFFKYLRNVSIEGDLNKPNIEFTADGD 445
            |.|....|....:.|:|.:...:...||: :..:.:|.||            .::|||.......
  Fly   114 YFYHASIYSIWRSLRNRFMFVYTKEFEDK-KDSYLSGYIF------------QDQPNILVITSQY 165

  Fly   446 LRSAELKIMNLR---PSANNKN---------LVWEEIGVWKSWETQ--------KLDIRDIAWPG 490
            |.|:..:|...|   |...|||         ..::..|...:||||        .|..|::.   
  Fly   166 LNSSTFEIKTNRFVGPRNFNKNPEPVEFYILQRFDAKGTKATWETQSAMSSKMRNLKGREVV--- 227

  Fly   491 NSHAPPQGVPEKFHLKITFLEEAPYINLSPADPVSGKCLMDRGVLCRVAADHEMAADIDVGQAHR 555
                            |...:..|::.|....|   ....||.:         ...|:.:     
  Fly   228 ----------------IGIFDYKPFMLLDYEKP---PLYYDRFM---------NTTDVTI----- 259

  Fly   556 NESFYQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTLE-NGKWNGLIADLVNRKTDMVLTSL 619
                    .|..|.|:..|.|....|.::...|...||.:. |....||:..:::|:.|..:..:
  Fly   260 --------DGTDIQLMLIFCELYNCTIQVDTSEPYDWGDIYLNASGYGLVGMILDRRNDYGVGGM 316

  Fly   620 MINTEREAVVDFSEPFMETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFLFE 684
            .:..|....:|.:.....:|:..:|.....:||.|..|.||....||.|.:..:..:..:.....
  Fly   317 YLWYEAYEYMDMTHFLGRSGVTCLVPAPNRLISWTLLLRPFQFVLWMCVMLCLLLESLALGITRR 381

  Fly   685 WLSPSGYDMKLYLQNTNVTPYRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVF 749
            |...|     :...|:.::..||....|..|   .:.|:..:|.|  .:..|.:.....:..::.
  Fly   382 WEHSS-----VAAGNSWISSLRFGCISTLKL---FVNQSTNYVTS--SYALRTVLVASYMIDIIL 436

  Fly   750 LAIYTANLAAFMI--TREEFHEFSGLNDSRLVHPFSHKPSFK------FGTIPYSHTDSTIHKYF 806
            ..:|:..|||.:.  |.||      ..||| ...|.||..:.      ..||.....|..:   .
  Fly   437 TTVYSGGLAAILTLPTLEE------AADSR-QRLFDHKLIWTGTSQAWITTIDERSADPVL---L 491

  Fly   807 NVMHNYMRQYNKTSVADGVAAVLNGNLDSFIYDGTVLDY-----LVAQD--EDCRLMTVGSWYAM 864
            .:|.:| |.|:    |:.::|..:.....|:.:.....:     |:..|  :..:||....::|.
  Fly   492 GLMEHY-RVYD----ANLISAFSHTEQMGFVVERLQFGHLGNTELIENDALKRLKLMVDDIYFAF 551

  Fly   865 TGYGLAF-SRNSKYVQMFNKRLLEFRANGDLERLRRYWMTGTCRPGKQEHKSSD----------- 917
            |   :|| .|...::..:|..:|.:.::|    ..::|...........|:.:.           
  Fly   552 T---VAFVPRLWPHLNAYNDFILAWHSSG----FDKFWEWKIAAEYMNAHRQNRIVASEKTNLDI 609

  Fly   918 ---PLALEQFLSAFLLLMAGILLAALLLLLE 945
               .|.::.|:...||...|::.:.|..|.|
  Fly   610 GPVKLGIDNFIGLILLWCFGMICSLLTFLGE 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 28/128 (22%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 81/422 (19%)
Lig_chan 665..928 CDD:278489 53/292 (18%)
Ir76aNP_001097647.3 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463023
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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