DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar2 and Ir68b

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster


Alignment Length:687 Identity:137/687 - (19%)
Similarity:217/687 - (31%) Gaps:200/687 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   363 FDTSSAALMNE----ISNAIKIYSYGVEAYLTDPANRDRRLTTQSLSCEDEGRGRWDNGEIFFKY 423
            ||...:||..:    :.:.:.:.:..:||:..:|..|     |.|||             ||   
  Fly    47 FDADYSALELDLYRCVGSRLPVITRNMEAHELEPFRR-----TDSLS-------------IF--- 90

  Fly   424 LRNVSIEGDLNKPNIEFTADGDLRSAELKIMN-LRPSANNKNL-----VWEEIGVWK-------S 475
                         .|.....||  |...:|:: |.|....|::     ||...|..:       |
  Fly    91 -------------QIPAAEKGD--SLVRRILDMLNPHQRRKHMHKYLFVWPNAGRHQLLRLFRGS 140

  Fly   476 W-------------ETQKLDIRDIAWPG-------NSHAP-------PQGVPEKFHLKITFLEEA 513
            |             |....|....||.|       :...|       .:|.|.:|.:   |.:..
  Fly   141 WAKKLLYGLAITGRENGTFDFDPFAWGGLQVIQRLDGEVPYARKVKDLRGYPLRFSM---FTDPL 202

  Fly   514 PYINLSPADPVSGKCLMDRGVLCRVAADHEMAADIDVGQAHRNESFYQCCSGFCIDLLEKFAEEL 578
            ..:..||.: .:|...:| ||..||..: .:.|.:.......|||:.:|                
  Fly   203 MAMPRSPVE-TAGYQAVD-GVAARVVGE-MLNASVTYVFPEDNESYGRC---------------- 248

  Fly   579 GFTYELVRVEDGKWGTLENGKWNGLIADLVNRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIV 643
                            |.||.:.|:::|:|...|.....|..:.......|:...|:....:.:|
  Fly   249 ----------------LPNGNYTGVVSDIVGGHTHFAPNSRFVLDCIWPAVEVLYPYTRRNLHLV 297

  Fly   644 VAKRTGIISP--TAFLEPFDTASWMLVGIVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNVTPYR 706
            |.  ...|.|  ..|:..|....|.|:.:..:     ::.|..|:...       ||..  .|.|
  Fly   298 VP--ASAIQPEYLIFVRVFRRTVWYLLLVTLL-----VVVLVFWVMQR-------LQRR--IPRR 346

  Fly   707 FSL-FRTYWLVWAVLFQAAVHVDSPRGFTSRFMT-----NVWALFAVVFLAIYTANLAAFMITRE 765
            ..: |:..|.....:| ...||..|.|..|.|.:     ..|.||:.|...||.|.|.:..:...
  Fly   347 GVIQFQATWYEILEMF-GKTHVGEPAGRLSSFSSMRTFLMGWILFSYVLSTIYFAKLESGFVRPS 410

  Fly   766 EFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDS--TIHKYFNVMHNYMRQYN---KTSVADGV 825
            ...:...::|  |||...|..:.   |..|....|  |.|:| .::.|..||..   .||....|
  Fly   411 YEEQVDRVDD--LVHLDVHIYAV---TTMYDAVRSALTEHQY-GLLENRSRQLPLGIATSYYQPV 469

  Fly   826 AAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLA------------FSRNSKYV 878
            ....:......:.|....|:|.        :|..|......|.:|            ..|.|.::
  Fly   470 VRRRDRRAAFIMRDFHARDFLA--------ITYDSQAERPAYHIAREYLRSMICTYILPRGSPFL 526

  Fly   879 QMFNKRLLEFRANGDLERLRRYWMTGTCRPGKQ-----------EHKSSDP-------------L 919
            .........|..:|..|..|:  |....|.|..           :...:|.             |
  Fly   527 HRLESLYSGFLEHGFFEHWRQ--MDLITRVGASPDAEEFLEDLGDQTDTDSGSNELAIRNKKVVL 589

  Fly   920 ALEQFLSAFLLLMAGILLAALLLLLEHVYFKYIRKRL 956
            .|:....||.|...||.::.|...:||.::.:.|:.|
  Fly   590 TLDILQGAFYLWSVGIGISCLGFAVEHAHWFWRRQTL 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 31/156 (20%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 87/430 (20%)
Lig_chan 665..928 CDD:278489 61/309 (20%)
Ir68bNP_648548.1 Lig_chan 333..607 CDD:278489 63/299 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463098
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.