DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and gria3b

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_938174.1 Gene:gria3b / 368416 ZFINID:ZDB-GENE-030616-53 Length:883 Species:Danio rerio


Alignment Length:967 Identity:219/967 - (22%)
Similarity:368/967 - (38%) Gaps:248/967 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 GGSLSKGAAANKEQLNIG------LIAPHTNFGKREYLRSINNAVTGLTKTRGAKLTFLKDYSFE 145
            |.||    |....|:|||      .:..|:.|.....|.:.|..:|                   
Zfish    14 GTSL----AGFPNQINIGGLFMRSTVQEHSAFRFAVQLYNTNQNMT------------------- 55

  Fly   146 QKNIH--FDMMSLTPSPT-AILSTLCKEFLRVNVSAILYMMNNEQFG-HSTASAQYFLQLAGYLG 206
            :|..|  :::.:|..|.: ::....|.:|.| .|.||        || :...|........|.|.
Zfish    56 EKPFHLNYNVDNLESSNSFSVTHAFCSQFSR-GVYAI--------FGFYDKKSMNTLTSFCGALH 111

  Fly   207 IPVI--SWNADNSGLERRASQSTLQLQLAPSIEHQSAAMLSILERYKWHQFSVVTSQIAGHDDFV 269
            ...:  |:..|        |.....:|:.|.::   .|:||:|..|||.:|..:.....|. ..:
Zfish   112 TSFVTPSYPID--------SDVQFVIQMRPPLK---GAVLSLLSHYKWDKFVYLYDTDRGF-SIL 164

  Fly   270 QAVRERVAEMQEHFKFTILNSIVVTRTSDLMELVNS-EARVMLLYATQTEAITILRAAEEMKLTG 333
            ||:.|  |.:..:::.|..:...:|...:...::.. :.|....|....|...|....|::...|
Zfish   165 QAIME--AAVANNWQVTARSVGSITDPQEFRRIIEEMDRRQEKRYLIDCEVDRINVILEQVVTLG 227

  Fly   334 EN---YVWVVSQSVIEKKDAHSQFPVGMLGVHFDTSSAALMNEISNAIKIYSYGVEAYLTDPANR 395
            :|   |.::::.             :|...:..|              |::..|.........|.
Zfish   228 KNSRGYHYIIAN-------------LGFTNISLD--------------KVFLGGANISGFQIINP 265

  Fly   396 DRRLTTQSLSCEDEGRGRWD-----------NGEI----------------FFKYLRNVSIE--- 430
            :..:..|.|.       |||           |..:                .|:|||...::   
Zfish   266 ENLVVQQFLQ-------RWDRLDEREFPEAKNTPLKYTSALSYDAILVIAEAFRYLRRQRVDVSR 323

  Fly   431 ----GD-LNKPNIEFTADGDLRSAELKIMNLRPSANNKNL------------VWE-------EIG 471
                || |..|.:.::...|:..| ||::.::....|...            |:|       :||
Zfish   324 RGSAGDCLANPAVPWSQGIDIERA-LKMVQVQGMTGNIQFDSFGRRTNYTIDVYEMKTGGPRKIG 387

  Fly   472 VWKSWETQKLDIRDIAWPGNSHAPPQGVPEKFHLKITFLEEAPYINLSPADPVSGKCLMDRGVLC 536
            .|..:| :.::|.|..:..:|.:     .|...:.:|.:.||||:                    
Zfish   388 YWNEFE-RFVNIMDQQFTNDSSS-----VENRTIVVTTIMEAPYV-------------------- 426

  Fly   537 RVAADHEMAADIDVGQAHRNESFYQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTL--ENGK 599
             :...:.|       ....||.:    .|:|:||..:.|:.:|..|.|..|.|||:|..  |...
Zfish   427 -MYKKNHM-------HLEGNEKY----EGYCVDLASEIAKHVGIKYRLSIVMDGKYGARDPETKS 479

  Fly   600 WNGLIADLVNRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIVVAK----RTGIISPTAFLEPF 660
            |||::.:||..:.|:.:..|.|...||.|:|||:|||..||:|::.|    :.|:.|   ||:|.
Zfish   480 WNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFS---FLDPL 541

  Fly   661 DTASWMLVGIVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNVT---------PYRFSLFRTYWLV 716
            ....||.: :.|....:.::||....||  |:.:  |..|:..         |..|.:|.:.|..
Zfish   542 AYEIWMCI-VFAYIGVSVVLFLVSRFSP--YEWQ--LDETDEVKDPQTPPDPPNDFGIFNSLWFS 601

  Fly   717 WAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVHP 781
            .....|....: |||..:.|.:..||..|.::.::.||||||||            |...|:|.|
Zfish   602 LGAFMQQGCDI-SPRSLSGRIVGGVWWFFTLIIISSYTANLAAF------------LTVERMVSP 653

  Fly   782 ------FSHKPSFKFGTIPYSHTDSTIHK----YFNVMHNYMRQ-----YNKTSVADGVAAV--L 829
                  .:.:....:||:....|.....:    .:..|.:||:.     :.||: .||||.|  .
Zfish   654 IESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFAKTT-PDGVARVRKS 717

  Fly   830 NGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAFSRNSKYVQMFNKRLLEFRANGDL 894
            .|.. :|:.:.|:.:| :.|.:.|..|.||......|||:|..:.|......|..:|:....|.|
Zfish   718 KGKF-AFLLESTMNEY-IEQRKPCDTMKVGGNLDSKGYGVATPKGSALRNAVNLAVLKLNEQGLL 780

  Fly   895 ERLRRYWM--TGTCRPGKQEHK-SSDPLALEQFLSAFLLLMAGILLAALLLLLEHVY 948
            ::|:..|.  .|.|..|..:.| .:..|:|......|.:|:.|:.||.::.|:|..|
Zfish   781 DKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIEFCY 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 84/460 (18%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 117/439 (27%)
Lig_chan 665..928 CDD:278489 73/291 (25%)
gria3bNP_938174.1 Periplasmic_Binding_Protein_Type_1 25..396 CDD:299141 81/448 (18%)
ANF_receptor 36..379 CDD:279440 74/419 (18%)
PBP2_iGluR_AMPA 412..794 CDD:270433 116/437 (27%)
Lig_chan 544..824 CDD:278489 75/300 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591813
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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