DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and GluRIIE

DIOPT Version :10

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster


Alignment Length:16 Identity:6/16 - (37%)
Similarity:8/16 - (50%) Gaps:0/16 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 PPAYAAPAGGYAVAGK 66
            |.:..|.|.|:|...|
  Fly   366 PESGTAAAHGFAREAK 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..485 CDD:380601
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 40..402 CDD:380605 6/16 (38%)
PBP2_iGluR_Kainate 419..790 CDD:270432
Lig_chan 551..824 CDD:459656
Blue background indicates that the domain is not in the aligned region.

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