DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and Ir7b

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster


Alignment Length:595 Identity:92/595 - (15%)
Similarity:182/595 - (30%) Gaps:207/595 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   495 PPQGVPEKFHLKITFLEEAPYINLSPADPVSGKCLMDRGVLCRVAADHEMAAD------------ 547
            |.....|:....:.||.....:|:              ||:.|...||.:...            
  Fly   128 PTDAYGEEMQATLRFLWRLSVLNV--------------GVVLRPPGDHILMVSYFPFSALHGCQV 178

  Fly   548 IDVGQAHRNE-----------------SFYQC---C---------------SGFCID----LLEK 573
            |.....:|.:                 :||.|   |               ||..:.    ||:.
  Fly   179 ISANVVNRYQVGTKRWASQDYFPSKLGNFYGCLLTCATWEDMPYLVWRPDGSGSFVGIEGALLQF 243

  Fly   574 FAEELGFTY--------ELVRVEDGKWGTLENGKWNGLIADLVNRKTDMVLTSLMINTEREAVVD 630
            .||.|.||.        |::...|      |:|:   :..::.....|..|..........:.:.
  Fly   244 MAENLNFTVGLYWMNKEEVLATFD------ESGR---IFDEIFGHHADFSLGGFHFKPSAGSEIP 299

  Fly   631 FSEP--FMETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFLFEW-------L 686
            :|:.  :..:.|.:|...::...:......||....|..:|:|.|.|...::.|..|       .
  Fly   300 YSQSTYYFMSHIMLVTNLQSAYSAYEKLSFPFTPLLWRAIGLVLILACLLLMLLVRWRHHHELPR 364

  Fly   687 SPSGYDMKLYLQNTNVTPYRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLA 751
            :|. |::.:.....|:        ...|:              |:.|.||.:...|....:|..:
  Fly   365 NPY-YELLVLTMGGNL--------EDRWV--------------PQRFPSRLVLLTWLFATLVLRS 406

  Fly   752 IYTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTIHKYFNVMHNYMRQY 816
            .|.:.:  :.:.|::...                       .|.......:.::|.:.   :.:.
  Fly   407 GYQSGM--YQLLRQDTQR-----------------------NPPQTISEVLAQHFTIQ---LAEV 443

  Fly   817 NKTSVADGVAAVLNGNLDSFIY-DGTVLD---YLVAQDEDCRLMTVGSWYAMTGY---------- 867
            |:..:   :|::.....:..:| :|:.|.   .|..|......:.:.:.|...||          
  Fly   444 NEARI---LASLPELRPEQLVYLEGSELQSFPALAQQSGSSARVAILTPYEYFGYFRKVHPMSRR 505

  Fly   868 -----------GLAF--SRNSKYVQMFNKRLLEFRANGDLERLRRYWMT-------GTCRPGKQE 912
                       .|||  .|:|..|.:.||::.....:|.||...|.:::       ...|.....
  Fly   506 LHLVRERIYTQQLAFYVRRHSHLVGVLNKQIQHAHTHGFLEHWTRQYVSAVDEKDESVARIASTS 570

  Fly   913 HKS-----SDP------------------LALEQFLSAFLLL----MAGILLAALLLLLEHVYFK 950
            :.:     .||                  |::.:..:.|.|:    :..:::..|.|||..:..:
  Fly   571 YSTLDGIDGDPSLSESEEDQQVAPVRQNVLSMRELAALFWLILWANLGAVVVFVLELLLPRIKLR 635

  Fly   951 YIRKRLAKKD 960
            .|.::: |.|
  Fly   636 KILRKM-KSD 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 77/507 (15%)
Lig_chan 665..928 CDD:278489 47/326 (14%)
Ir7bNP_572410.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463093
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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