DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and GRIN2C

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:XP_016880033.1 Gene:GRIN2C / 2905 HGNCID:4587 Length:1337 Species:Homo sapiens


Alignment Length:997 Identity:296/997 - (29%)
Similarity:488/997 - (48%) Gaps:141/997 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 PPSGPISLLLLTVLTLLILDTRSCQGLRLTNGGGSLSKGAAANKEQLNIGLIAPHTNFGKREYLR 119
            ||..| |..|.|.::|.:|...|.|...:..||.                       .|....|.
Human    47 PPVCP-SASLQTSVSLPVLVLVSPQDPPVDMGGA-----------------------LGPALLLT 87

  Fly   120 SINNAVTGLTKTRG---------------------AKLTFLKDYSFEQKNIHFDMMSL---TPSP 160
            |:..|..||...:|                     |:||   ..||....:....:::   |.:|
Human    88 SLFGAWAGLGPGQGEQGMTVAVVFSSSGPPQAQFRARLT---PQSFLDLPLEIQPLTVGVNTTNP 149

  Fly   161 TAILSTLCKEFLRVNVSAILYMMNNEQFGHSTASAQYFLQLAGYLGIPVISWNADNSGLERRASQ 225
            :::|:.:|......:|..|::..|.:    :.|.||....::....:|::|.:..::.:......
Human   150 SSLLTQICGLLGAAHVHGIVFEDNVD----TEAVAQILDFISSQTHVPILSISGGSAVVLTPKEP 210

  Fly   226 STLQLQLAPSIEHQSAAMLSILERYKWHQFSVVTSQIAGHDDFVQAVRERVAEMQEHFKFTILNS 290
            .:..|||..|:|.|...:..:||.|.|..|:|:||...||..|::.|| .||: ..|..:.:|:.
Human   211 GSAFLQLGVSLEQQLQVLFKVLEEYDWSAFAVITSLHPGHALFLEGVR-AVAD-ASHVSWRLLDV 273

  Fly   291 IVV--------TRTSDLMELVNSEARVMLLYATQTEAITILRAAEEMKLTGENYVWVVSQSVIEK 347
            :.:        .||..|:..:  :|.|.:.|.::.||..:...|.:..|.|..:||:|....:..
Human   274 VTLELGPGGPRARTQRLLRQL--DAPVFVAYCSREEAEVLFAEAAQAGLVGPGHVWLVPNLALGS 336

  Fly   348 KDA-HSQFPVGMLGVHFDTSSAALMNEISNAIKIYSYGVEAY------LTDPANRDRRLTTQSLS 405
            .|| .:.||||::.|..::...:|..::.:.:.|.:.|..:|      |..||. |.|:....:|
Human   337 TDAPPATFPVGLISVVTESWRLSLRQKVRDGVAILALGAHSYWRQHGTLPAPAG-DCRVHPGPVS 400

  Fly   406 CEDEGRGRWDNGEIFFKYLRNVSIEGDLNKPNIEFTADGDLRSAELKIMNLRPSANNKNLVWEEI 470
                     ...|.|:::|.||:.||    .:..|:..|.|....:.::.|     |::.:||.:
Human   401 ---------PAREAFYRHLLNVTWEG----RDFSFSPGGYLVQPTMVVIAL-----NRHRLWEMV 447

  Fly   471 GVWKSWETQKLDIRDIAWPGNSHAPPQGVPEKFHLKITFLEEAPYINLSPADPVSGKCLMDRGVL 535
            |   .||...|.::...||..| |..|.|.:..||.:..|||.|::.:...||.:|.|:.:. |.
Human   448 G---RWEHGVLYMKYPVWPRYS-ASLQPVVDSRHLTVATLEERPFVIVESPDPGTGGCVPNT-VP 507

  Fly   536 CRVAADHEMAADIDVGQAHRNESFYQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTLENGKW 600
            ||..::|..::. ||....:     .||.|||||:|:|.|..:.|:|:|..|.:||.|....|.|
Human   508 CRRQSNHTFSSG-DVAPYTK-----LCCKGFCIDILKKLARVVKFSYDLYLVTNGKHGKRVRGVW 566

  Fly   601 NGLIADLVNRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIVVAKRTGIISPTAFLEPFDTASW 665
            ||:|.::..::.||.:.||.||.||..:||||.||:||||:::||:..|.:||:|||||:..|.|
Human   567 NGMIGEVYYKRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVW 631

  Fly   666 MLVGIVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNVTPYRFSLFRTYWLVWAVLFQAAVHVDSP 730
            :::.::.:......:|:||:.||..|:..|.....:..| .|::.::.||:||::|..:|.:::|
Human   632 VMMFVMCLTVVAITVFMFEYFSPVSYNQNLTRGKKSGGP-AFTIGKSVWLLWALVFNNSVPIENP 695

  Fly   731 RGFTSRFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVH--------------- 780
            ||.||:.|..|||.|||:|||.||||||||||..:.....|||:|.:.:|               
Human   696 RGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKSLHLENTGVAWTAFKTFC 760

  Fly   781 ------PFSHKPSFKFGTIPYSHTDSTIHKYFNVMHNYMRQYNKTSVADGVAAVLNGN------- 832
                  |....|.|:|||:|...|:..|...:..||.:|.::|:.||.|.:.::..|:       
Human   761 SDYFQRPQDQYPPFRFGTVPNGSTERNIRSNYRDMHTHMVKFNQRSVEDALTSLKMGSEAQPVPR 825

  Fly   833 -LDSFIYDGTVLDYLVAQDEDCRLMTVGSW--YAMTGYGLAFSRNSKYVQMFNKRLLEFRANGDL 894
             ||:||||..||:|:..:||.|:|:|:||.  :|.||||:|..::|.:.:..:..||:|..:|:.
Human   826 KLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIAMQKDSHWKRAIDLALLQFLGDGET 890

  Fly   895 ERLRRYWMTGTCRPGKQEHKSSDPLALEQFLSAFLLLMAGILLAALLLLLEH-VYFKYIRKRLAK 958
            ::|...|::|.|:..|.|..|| .|.::.....|.:|:..:.||.|:...|| ||:|.   |.:.
Human   891 QKLETVWLSGICQNEKNEVMSS-KLDIDNMAGVFYMLLVAMGLALLVFAWEHLVYWKL---RHSV 951

  Fly   959 KDGGHCCALISLSMGKSLTFRG 980
            .:......|::.|.|....|.|
Human   952 PNSSQLDFLLAFSRGIYSCFSG 973

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 97/429 (23%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 161/436 (37%)
Lig_chan 665..928 CDD:278489 99/293 (34%)
GRIN2CXP_016880033.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156242
Domainoid 1 1.000 214 1.000 Domainoid score I2727
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 455 1.000 Inparanoid score I1591
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D279143at33208
OrthoFinder 1 1.000 - - FOG0000775
OrthoInspector 1 1.000 - - otm40973
orthoMCL 1 0.900 - - OOG6_102799
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3072
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.790

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