DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and glr-9

DIOPT Version :10

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_502564.2 Gene:glr-9 / 189098 WormBaseID:WBGene00012190 Length:487 Species:Caenorhabditis elegans


Alignment Length:463 Identity:93/463 - (20%)
Similarity:170/463 - (36%) Gaps:116/463 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   561 QC-CSGFCIDLLEKFAEELGFTYELVRVEDG------KWGTLE-NGKWNGLIADLVNRKTDMVLT 617
            || ..|:.:::|:...:.|  .:|::.|...      .||||: ||.|:|::..|.|...|.|..
 Worm    33 QCPFPGWTMEVLKMITDSL--KWEIIPVVTPTIVGGLDWGTLQKNGTWSGVLGYLQNGTADAVAL 95

  Fly   618 SLMINTEREAVVDFSEPFMETGIAIVVAKRT---GIISPTAFLEPFDTASWMLVGIVAIQAATFM 679
            .......|....::|.|........|..|:|   |.:...|| :||....|:.:      .|:.:
 Worm    96 MYQKTDTRNEYFEYSYPVTNVQPVFVARKKTETLGSVLWNAF-KPFSVEVWLCL------LASLV 153

  Fly   680 IFLFEWLSPSGYDMKLYLQNTNVTPYRFSLFRTYWLVWAVL-FQAAVHVDSPRGFT--SRFMTNV 741
            :.|...::.||.:.||..:         |.||.:.::|.|: .|.....|....:|  ...:..|
 Worm   154 LNLLIMIAISGIEFKLLFR---------SRFRPWEMLWHVVQLQLDEKSDDMLFYTLSGNIVLFV 209

  Fly   742 WALF-AVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTI--- 802
            :||. :.:.:.:|...|...:||..                         |..|:::.|..|   
 Worm   210 FALLQSGILIEVYKGMLLTALITSN-------------------------GDNPFANADEMIKLI 249

  Fly   803 -HKYFNVMHNYMRQY----------------------NKTSVADGVAAVLNGNLDSFIYDGTVLD 844
             .|.:::..|||..:                      |....|..|:|.|:      :.|.....
 Worm   250 GEKKYHLTTNYMGNWYFDDLQHSDQQHFVSLRAATASNPVIPAASVSAALD------LVDSGKYI 308

  Fly   845 YLVAQD--------EDCRLMTVGSWYAMTGYGLAFSRNSKYVQMFNKRLLEFRANGDLER-LRRY 900
            |.:.||        |.|..:.|............|::|...:..||.:::..:|  .::| ..:|
 Worm   309 YPIQQDSLAMQMSKERCNYVYVSDGMPQVSSFFVFTKNFSGIAEFNTQIIMNQA--FIQRTFNKY 371

  Fly   901 WMTG-------TCRPGKQEHKSSD---PLALEQFLSAFLLLMAGILLAALLLLLEHVYFKYIR-- 953
            :..|       .|.  ..|..:||   ||.:|..:..|.:...|:..:.::.:.|..::.::|  
 Worm   372 FNEGFKLGFIPKCE--VTEPTASDATKPLDIESVIGVFTIGALGVAASLMVFVFEIYHYWHVRIL 434

  Fly   954 -KRLAKKD 960
             :|...:|
 Worm   435 ARRARMRD 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..485 CDD:380601
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 81/403 (20%)
glr-9NP_502564.2 HisJ 38..>132 CDD:440596 24/95 (25%)
Blue background indicates that the domain is not in the aligned region.

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