DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and F59E12.8

DIOPT Version :10

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_001364714.1 Gene:F59E12.8 / 186629 WormBaseID:WBGene00019123 Length:379 Species:Caenorhabditis elegans


Alignment Length:415 Identity:74/415 - (17%)
Similarity:130/415 - (31%) Gaps:135/415 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   603 LIADLVNRKTDMVLTSLMINTEREAVVDFSEPF-METGIAIVVAKRTGIISPTAFLEPFDTASWM 666
            ::.|:...:.||......:..:|..|:.|:.|. .|.....::......:.......||.|..|:
 Worm     1 MLGDIQKGRIDMACGRFRMTADRANVLTFTYPTQFEVNQVYLITDPQKSVDVVFLFHPFSTTVWL 65

  Fly   667 LVGI-VAIQAATFMIFLF-------------EWLSPSGYDMKLYLQNTNV------TPYRFSLFR 711
            |:.: |.:.|..|.|..|             |.:..|.:.:.|...|..:      |.:.|.||.
 Worm    66 LLSLTVLVVAIVFFILRFVEFKSTKETESSYECIQNSIFQVLLSTFNLEIRVAKKSTFFAFHLFS 130

  Fly   712 TYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANLAAFMITREE----FHEFSG 772
            |.||:      |..|                     ||:..||:.|:..|:..::    |..|.|
 Worm   131 TIWLL------AWFH---------------------VFIDFYTSELSGMMVVSDKRQVPFDNFYG 168

  Fly   773 LNDS------RLVHPFSHKPSFKFGTIPYSHTDSTIHKYFN-VMHNYMRQYNKTSVADGVAAVLN 830
            ..|.      ||..|.:.    :....|:..|.|..:..|: ::..:..:|.             
 Worm   169 FIDHLRKGNYRLFTPSAD----RIPECPHEITTSKCNAIFSEILSKHPPEYG------------- 216

  Fly   831 GNLDSFIYDGTVLDYLVAQDEDC----RLMTVG-SWYAMTGYGLAFS------------------ 872
                         |.:...|.:.    ::..|| .||........||                  
 Worm   217 -------------DLMQLNDREFVSSRKIPLVGFGWYPAQRISSKFSIWTQELFHSDIWLIRDFP 268

  Fly   873 ---------RNSKYVQMFNKRLLEFRANGDLERLRRYW------MTGTCRPGKQEHKSSDPLALE 922
                     ....|:...|:.::  :......|:..::      :|.|.:|.|..      .:|.
 Worm   269 VCPAAYIVRPTFPYLDELNEMII--KVLPAFSRIDNHYTPAYPELTLTGKPSKSS------FSLN 325

  Fly   923 QFLSAFLLLMAGILLAALLLLLEHV 947
            |..|.||:.:.|..::.|.|:.|.|
 Worm   326 QLSSIFLIHLLGAFVSTLFLIAELV 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..485 CDD:380601
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 62/374 (17%)
F59E12.8NP_001364714.1 None
Blue background indicates that the domain is not in the aligned region.

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