DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar2 and glr-7

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_001337310.1 Gene:glr-7 / 180547 WormBaseID:WBGene00001618 Length:885 Species:Caenorhabditis elegans


Alignment Length:933 Identity:189/933 - (20%)
Similarity:340/933 - (36%) Gaps:277/933 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 TFLKDYSFEQKNIHFDMMSL----TPS-PTAILSTLCKE------FLRVNV---SAILYMMNNEQ 187
            |...|.::....::|:..|:    :|| .|.:||||..:      |..:|:   |.:||  :|..
 Worm    62 TIQVDLNYWSLPLNFNGTSVPTISSPSYTTMVLSTLVFQNVITDIFADLNITPNSTVLY--DNMY 124

  Fly   188 FGHSTASAQYFLQLAGYLGIPVISWNADNSGLERRASQSTLQLQLAPSIEHQSAAMLSILERYKW 252
            ....||....|..|.|...:|:     :.:.|..||..:.|::          |::.|::...|.
 Worm   125 PPDFTAWRDAFSVLPGIRFVPM-----ETTVLRMRAQITQLRM----------ASINSLILVAKT 174

  Fly   253 HQFSVVTSQIAGHDDFVQAVRERVAEMQEHFKFTILNSIVVTRTSDLMELVNSEARVMLLYATQT 317
            ......|.:.|   ||::   :||           .|:.|:|:.....:..:.|:..|.      
 Worm   175 ENVERFTLEAA---DFIE---QRV-----------FNTYVLTKDITAFKCDSCESAFMF------ 216

  Fly   318 EAITILRAAEEMKLTGENYVWVVSQSVIEKKDAHSQFPVGMLGVHFDTSSAALMNEISNAIKIYS 382
                                |:            ..||||.|....|.......|||        
 Worm   217 --------------------WL------------RPFPVGKLMEIRDLDDYLFRNEI-------- 241

  Fly   383 YGVEAYLTDPANRDRRLTTQSLSCEDEGRGRWDNGEI---------FFKYLRNVSIEGDL----- 433
             |:|.                    |.....||:..:         .|:.:|.::...|:     
 Worm   242 -GLEL--------------------DYSINGWDSLNVAFYMNVMGYAFETIRTMNATFDVLPTFT 285

  Fly   434 -----NKPNI-----------------EFTADG---DLRSAELKIMNLRPSANNKNLVW-EEIGV 472
                 ::|||                 .:|..|   ..:..|::|..:....::::.:: :|:||
 Worm   286 CQTGPSEPNITTTVRDIILNDPAHEYGNYTEAGLNMFFQDVEVRIYKIDRDRDHEDALFNKEVGV 350

  Fly   473 WK-------SWETQKLDIRDIAWPGNSHAPPQGVPEKFHLKITFLEEAPYINLSPADPVSGKCLM 530
            |.       .:.|.::|:|::.                ..::..|.:.|::..: .||       
 Worm   351 WSPISKLSVMYGTLQVDVRNLN----------------IFRVVTLIQPPFVQRT-GDP------- 391

  Fly   531 DRGVLCRVAADHEMAADIDVGQAHRNESFYQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTL 595
                                      ::.|:   |:||||:.....|:.|||.:..||||.:||:
 Worm   392 --------------------------DTPYE---GYCIDLINMIQVEVNFTYTIYEVEDGSFGTM 427

  Fly   596 -ENGKWNGLIADLVNRKTDMVLTSLMINTEREAVVDFSEPFME-TGIAIVVAKRTGIISPTAFLE 658
             :||.|||||..||:...|:.|..|.:..|||..|||:.|:.: .|..|::.|.....|...|::
 Worm   428 DDNGNWNGLIGALVSGSADIALAPLSVMAERENDVDFTVPYYDLVGTTILMKKADVEYSLFKFMK 492

  Fly   659 PFDTASWMLVGIVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNVTPYRFSLFRTYWLVWAVLFQA 723
            ..:...|:.: :.|....:.::::|:..||..:.........::...:|||....|.....|...
 Worm   493 VLEWPVWLCI-VAAYLFTSILLWIFDRFSPYSFTNNKERYQNDIEKRQFSLKECLWFCMTSLTPQ 556

  Fly   724 AVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVHPFSHKP-- 786
            . ..::|:..:.|.:...|.||..:.:|.||||||||:.........|.|:|....:...:.|  
 Worm   557 G-GGEAPKNISGRLVAATWWLFGFIIIASYTANLAAFLTVSRLEQPISSLDDLAKQYKIEYAPIK 620

  Fly   787 -------------------------SFKFGTIPYSHTDSTIHKY-----FNVMHNYMRQYN-KTS 820
                                     |......|.......:..|     |..|..||::.. ..:
 Worm   621 GSASETYFRRMAEIEETFYNMWKEMSLNESMSPRDRAKLAVWDYPVSDKFTNMWRYMQESKLPVN 685

  Fly   821 VADGVAAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAFSR--------NSKY 877
            :...|..||| ::|.|.:.|...:...|...:|.|..||:.::...|.:|...        :|..
 Worm   686 MDTAVDRVLN-SVDGFAFIGDATEIKYAALTNCNLQQVGTEFSRKPYAIAVQSGHILKDKISSAI 749

  Fly   878 VQMFNKRLLEFRANGDLERLRRYWMTG-----TCRPGKQEHKSSDPLALEQFLSAFLLLMAGILL 937
            :.:.|:|        .||.|:..|.|.     :|.....|   ||.::::.....|::::|||.|
 Worm   750 LMLLNER--------RLETLKEKWWTDNPNKVSCPDSSDE---SDGISIQNIGGVFIVILAGIAL 803

  Fly   938 AALLLLLEHVYFKYIRKRLAKKD 960
            :.:.|..|:.|:|...::.|:|:
 Worm   804 SIVTLAFEYYYYKRKARKAAEKE 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 73/413 (18%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 102/453 (23%)
Lig_chan 665..928 CDD:278489 61/308 (20%)
glr-7NP_001337310.1 Periplasmic_Binding_Protein_Type_1 <102..>220 CDD:324556 31/189 (16%)
PBP2_iGluR_putative 373..767 CDD:270435 100/441 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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