DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar2 and Grin2d

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:XP_036008580.1 Gene:Grin2d / 14814 MGIID:95823 Length:1345 Species:Mus musculus


Alignment Length:833 Identity:268/833 - (32%)
Similarity:408/833 - (48%) Gaps:134/833 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 SW----NADNSGLERRASQSTLQLQLAPSIEHQSAAMLSILERYKWHQFSVVTSQIAGHDDFVQA 271
            ||    :....|.|:... ||. |||..|.|.|...:..:||.|.|..|..||::..||..|   
Mouse   143 SWPPAISPKEQGHEKEKG-STF-LQLGSSTEQQLQVIFEVLEEYDWTSFVAVTTRAPGHRAF--- 202

  Fly   272 VRERVAEMQEHFKFTILNSIVVTRTSDLM---------------------ELVNSEARVMLLYAT 315
                            |:.|.|.....|:                     :|.:..|::.||:..
Mouse   203 ----------------LSYIEVLTDGSLVGWEHRGALTLDPGAGEAVLGAQLRSVSAQIRLLFCA 251

  Fly   316 QTEAITILRAAEEMKLTGENYVW--------------VVSQSVIEKKDAHSQFPVGMLGVHFDTS 366
            :.||..:.|||||..|||..|||              |..:.::....|  ..|.|:..|.....
Mouse   252 REEAEPVFRAAEEAGLTGPGYVWFMVGPQLAGGGGSGVPGEPLLLPGGA--PLPAGLFAVRSAGW 314

  Fly   367 SAALMNEISNAIKIYSYGVEAYLTD----PANRDRRLTTQSLSCEDEGRGRWDNGEIFFKYLRNV 427
            ...|...::..:.:.:.|.:|.|.|    |          .|..:...:.|...||...:|..|:
Mouse   315 RDDLARRVAAGVAVVARGAQALLRDYGFLP----------ELGHDCRAQNRTHRGESLHRYFMNI 369

  Fly   428 SIEGDLNKPNIEFTADGDLRSAELKIMNLRPSANNKNLVWEEIGVWKSWETQKLDIRDIAWP--G 490
            :.:   |: :..|..||.|.:..|.:::|     .::..||.:|   |||.|.|.::...|.  |
Mouse   370 TWD---NR-DYSFNEDGFLVNPSLVVISL-----TRDRTWEVVG---SWEQQTLRLKYPLWSRYG 422

  Fly   491 NSHAPPQGVPEKFHLKITFLEEAPYINLSPADPVSGKCLMDRGVLCR--VAADHEMAAD-IDVGQ 552
            ....|   |.:..||.:..|||.|::.:.||||:||.|:.| .|.||  :...|.:.|. .....
Mouse   423 RFLQP---VDDTQHLTVATLEERPFVIVEPADPISGTCIRD-SVPCRSQLNRTHSLVAPRSPPPD 483

  Fly   553 AHRNESFYQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTLENGKWNGLIADLVNRKTDMVLT 617
            |.|.|.  :||.|||||:|::.|..:||:|:|..|.:||.|...:|.|||:|.::..::.||.:.
Mouse   484 APRPEK--RCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMAIG 546

  Fly   618 SLMINTEREAVVDFSEPFMETGIAIVVAKRTGIISPTAFL-----------EPFDTASWMLVGIV 671
            ||.||.||..:||||.||:||||:::||:..|.:||:|||           ||:..|.|:::.::
Mouse   547 SLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLAFAWLMPPMSPEPYSPAVWVMMFVM 611

  Fly   672 AIQAATFMIFLFEWLSPSGYDMKLYLQNTNVTP--YRFSLFRTYWLVWAVLFQAAVHVDSPRGFT 734
            .:......:|:||:|||.||:..|   .|...|  ..|::.::.||:||::|..:|.|::|||.|
Mouse   612 CLTVVAVTVFIFEYLSPVGYNRSL---ATGKRPGGSTFTIGKSIWLLWALVFNNSVPVENPRGTT 673

  Fly   735 SRFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTD 799
            |:.|..|||.|||:|||.||||||||||..|.....|||:|.:...|....|..||||:|...|:
Mouse   674 SKIMVLVWAFFAVIFLASYTANLAAFMIQEEYVDTVSGLSDRKFQRPQEQYPPLKFGTVPNGSTE 738

  Fly   800 STIHKYFNVMHNYMRQYNKTSVADGVAAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSW--Y 862
            ..|...:..||:||.:||:..|.:.:..:..|.||:||||..||:|:..:||.|:|:|:||.  :
Mouse   739 KNIRSNYPDMHSYMVRYNQPRVEEALTQLKAGKLDAFIYDAAVLNYMARKDEGCKLVTIGSGKVF 803

  Fly   863 AMTGYGLAFSRNSKYVQMFNKRLLEFRANGDLERLRRYWMTGTCRPGKQEHKSSDPLALEQFLSA 927
            |.||||:|..:.|::.:..:..||:|..:.::|.|.|.|::|.|...|.|..|| .|.::.....
Mouse   804 ATTGYGIALHKGSRWKRPIDLALLQFLGDDEIEMLERLWLSGICHNDKIEVMSS-KLDIDNMAGV 867

  Fly   928 FLLLMAGILLAALLLLLEHVYFKYIRKRLAKKDGGHCCA-------LISLSMG 973
            |.:|:..:.|:.|:...||:.:..:|         ||..       |::.|.|
Mouse   868 FYMLLVAMGLSLLVFAWEHLVYWRLR---------HCLGPTHRMDFLLAFSRG 911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 76/323 (24%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 172/423 (41%)
Lig_chan 665..928 CDD:278489 104/266 (39%)
Grin2dXP_036008580.1 Periplasmic_Binding_Protein_type1 <156..415 CDD:415822 72/303 (24%)
PBP2_iGluR_NMDA_Nr2 432..849 CDD:270436 172/422 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846645
Domainoid 1 1.000 214 1.000 Domainoid score I2719
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H648
Inparanoid 1 1.050 455 1.000 Inparanoid score I1578
Isobase 1 0.950 - 0 Normalized mean entropy S5770
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D279143at33208
OrthoFinder 1 1.000 - - FOG0000775
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102799
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3072
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.740

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