DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and GRIN3B

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:NP_619635.1 Gene:GRIN3B / 116444 HGNCID:16768 Length:1043 Species:Homo sapiens


Alignment Length:872 Identity:234/872 - (26%)
Similarity:384/872 - (44%) Gaps:136/872 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 NIHFDMMSLTP---SPTAILSTLCKEFLRVNVSAILYMMNNEQFGHSTASAQYFLQLAGYLGIPV 209
            |:..:::...|   .|.::...||:..:...|:|:|      .|..:.........||.....||
Human    69 NLSLELVVAAPPARDPASLTRGLCQALVPPGVAALL------AFPEARPELLQLHFLAAATETPV 127

  Fly   210 ISWNADNSGLERRASQST--------LQLQLAPSIEHQSAAMLSILERYKWHQFSVV-------- 258
            :|       |.||.:::.        |||..|..:|.....::::|:.:.|....:.        
Human   128 LS-------LLRREARAPLGAPNPFHLQLHWASPLETLLDVLVAVLQAHAWEDVGLALCRTQDPG 185

  Fly   259 ------TSQ----------IAGHDDFVQAVRERVAEMQEHFKFTILNSIVVTRTSDLMELVNSEA 307
                  ||:          ::..|.....:|.|:|.|...                    |..||
Human   186 GLVALWTSRAGRPPQLVLDLSRRDTGDAGLRARLAPMAAP--------------------VGGEA 230

  Fly   308 RV---MLLYATQTEAITILRAAEEMKLTGENYVWVVSQSVIEKKDAHSQFPVGMLGVHFDTSSAA 369
            .|   :||      ...|.||...::.......|::...:..|....:..|.|:|.:. :.:...
Human   231 PVPAAVLL------GCDIARARRVLEAVPPGPHWLLGTPLPPKALPTAGLPPGLLALG-EVARPP 288

  Fly   370 LMNEISNAIKIYSYGV-EAYLTDPANRDRRLTTQSLSCED-EGRGRWDNGEIFFKYLRNVSIEGD 432
            |...|.:.:::.:..: .|....|   .|.|....::|.| :..|....|....::|.|.|.:|.
Human   289 LEAAIHDIVQLVARALGSAAQVQP---KRALLPAPVNCGDLQPAGPESPGRFLARFLANTSFQGR 350

  Fly   433 LNKPNIEFTADGDLR-SAELKIMNLRPSANNKNLVWEEIGVWKSWETQKLDIRDIAWPGNSHA-- 494
            ...  :..|....:. |...|:.:||....... .|..:|   ||...:||:.    ||.:.|  
Human   351 TGP--VWVTGSSQVHMSRHFKVWSLRRDPRGAP-AWATVG---SWRDGQLDLE----PGGASARP 405

  Fly   495 -PPQGVPEKFHLKITFLEEAPYINLSPADPVSGKCLMDRGVLCRVAADHEMA------ADIDVGQ 552
             ||||......|::..|.|.|::.....|. .|:|  ..|.||.....::.|      |.:..|.
Human   406 PPPQGAQVWPKLRVVTLLEHPFVFARDPDE-DGQC--PAGQLCLDPGTNDSATLDALFAALANGS 467

  Fly   553 AHRNESFYQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTLENGKWNGLIADLVNRKTDMVLT 617
            |.|  :..:||.|:||||||:.||:..|.:||..|.|||:|.|.:|:|.||:.||:..:..|.:|
Human   468 APR--ALRKCCYGYCIDLLERLAEDTPFDFELYLVGDGKYGALRDGRWTGLVGDLLAGRAHMAVT 530

  Fly   618 SLMINTEREAVVDFSEPFMETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFL 682
            |..||:.|..||||:.||..|.:.|:|..|.......||:.|...::|:.| ..|:......:.:
Human   531 SFSINSARSQVVDFTSPFFSTSLGIMVRARDTASPIGAFMWPLHWSTWLGV-FAALHLTALFLTV 594

  Fly   683 FEWLSPSGYDMKLYLQNTNVTPYR------FSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNV 741
            :||.||.|           :||..      ||......|.:|:||:..|...:|:..|.|.:.|:
Human   595 YEWRSPYG-----------LTPRGRNRSTVFSYSSALNLCYAILFRRTVSSKTPKCPTGRLLMNL 648

  Fly   742 WALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTIHKYF 806
            ||:|.::.|:.|||||||.|:..:.|.|.||::|.:|.||   ...|:|||:..|..::.|.|.|
Human   649 WAIFCLLVLSSYTANLAAVMVGDKTFEELSGIHDPKLHHP---AQGFRFGTVWESSAEAYIKKSF 710

  Fly   807 NVMHNYMRQYNKTSVADGVAAVLNG--NLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGL 869
            ..||.:||:::..:...|||.:.:.  .|::||.|.::|||.|:.|.||:|:|||..:|:.|||:
Human   711 PDMHAHMRRHSAPTTPRGVAMLTSDPPKLNAFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGYGI 775

  Fly   870 AFSRNSKYVQMFNKRLLEFRANGDLERLRRYWMTGT-CRPGKQEHKSSDPL--ALEQFLSAFLLL 931
            ...:||......::.:..::::|.::.|...|.... |  ||:....::.|  ::..|...|:||
Human   776 GLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYKMVPC--GKRVFAVTETLQMSIYHFAGLFVLL 838

  Fly   932 MAGILLAALLLLLEHVYFKYIRKRLAK 958
            ..|:..|.|..|.||.:|:....|:.|
Human   839 CLGLGSALLSSLGEHAFFRLALPRIRK 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 70/382 (18%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 141/420 (34%)
Lig_chan 665..928 CDD:278489 85/273 (31%)
GRIN3BNP_619635.1 PBP1_iGluR_NMDA_NR3 19..405 CDD:107372 73/388 (19%)
PBP2_iGluR_NMDA_Nr3 415..808 CDD:270438 139/412 (34%)
Lig_chan 576..842 CDD:278489 88/282 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156241
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

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