DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar2 and grin2b

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:996 Identity:302/996 - (30%)
Similarity:484/996 - (48%) Gaps:148/996 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 KNIH----FDMMSLTP----------SPTAILSTLCKEFLRVNVSAILYMMNNEQFGHSTASAQY 197
            |::|    |..:.:||          .|.:|::.:|.......|..::       ||..| ..:.
 Frog    46 KDVHEKDDFHHLPVTPRVALVTMNESDPKSIITRICDLMSDKKVQGVV-------FGDDT-DQEA 102

  Fly   198 FLQLAGYLGI----PVISWNADNSGLERRASQSTLQLQLAPSIEHQSAAMLSILERYKWHQFSVV 258
            ..|:..::.:    |::..:..:|.:.....::::..|..||||.|::.||:|:|.|.|:.||:|
 Frog   103 IAQILDFISVQTLTPILGIHGGSSMIMADKEEASMFFQFGPSIEQQASVMLNIMEEYDWYIFSIV 167

  Fly   259 TSQIAGHDDFVQAVRERVAEMQEHFKFTILNSIVVTRTSDLMELVNS---------------EAR 308
            |:...|:.||...||.           ||.||.|.....:::.|..|               ::.
 Frog   168 TTYFPGYQDFENKVRS-----------TIENSFVGWELEEVIHLDMSLDDNDSKIQNQLKKLQSP 221

  Fly   309 VMLLYATQTEAITILRAAEEMKLTGENYVWVVSQSVIEKKD-AHSQFPVGMLGVHFDTSSAALMN 372
            |:|||.|:.||..|...|..:.|||..|.|:|...|....| ..::||.|::.|.:|.....|..
 Frog   222 VILLYCTKEEATYIFEVAHSVGLTGYGYTWIVPSLVAGDTDTVPAEFPTGLISVSYDEWDYDLPA 286

  Fly   373 EISNAIKIYSYGVEAYLTDPANRDRRLTTQSLSCEDEGRGRWDNGEIFFKYLRNVSIEGDLNKPN 437
            .:.:.|.|.:......|::    ...:.....||.:....|.....:..:||.||:.||    .|
 Frog   287 RVRDGIAIITTAASTMLSE----HNSIPQSKSSCYNIQESRVYEAHMLKRYLINVTFEG----RN 343

  Fly   438 IEFTADGDLRSAELKIMNLRPSANNKNLVWEEIGVWKSWETQKLDIRDIAWPGNSHAPPQGVPEK 502
            :.|:.||.....:|.|:.|     |:...||.:|.:|.   :.|.::...||.....|.....:.
 Frog   344 LSFSEDGYQMHPKLVIILL-----NQQRKWERVGKYKD---RSLKMKY
YVWPVFELYPNSEEHKD 400

  Fly   503 FHLKITFLEEAPYINLSPADPVSGKCLMDRGVLCRVAADHEMAADIDVGQAHRNES----FYQCC 563
            .||.|..|||||::.:...||:||.| |...|.||.          .:...:|.|.    ..:||
 Frog   401 EHLSIVTLEEAPFVIVEDVDPLSGTC-MRNTVPCRK----------QIRTENRTEEGGNYIKRCC 454

  Fly   564 SGFCIDLLEKFAEELGFTYELVRVEDGKWGTLENGKWNGLIADLVNRKTDMVLTSLMINTEREAV 628
            .|||||:|:|.|:.:.|||:|..|.:||.|...||.|||:|.::|.::..|.:.||.||.||..|
 Frog   455 KGFCIDILKKIAKTVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVTKRAYMAVGSLTINEERSEV 519

  Fly   629 VDFSEPFMETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFLFEWLSPSGYDM 693
            ||||.||:||||:::|::..|.:||:||||||....|:::.::.:..:...:|:||:.||.||:.
 Frog   520 VDFSVPFIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNR 584

  Fly   694 KLYLQNTNVTPYRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANLA 758
            .|........| .|::.:..||:|.::|..:|.|.:|:|.||:.|.:|||.|||:|||.||||||
 Frog   585 CLADGREPGGP-SFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLA 648

  Fly   759 AFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTIHKYFNVMHNYMRQYNKTSVAD 823
            ||||..|...:.|||:|.:...|....|:|:|||:|...|:..|...:..||:||.::|:.||.|
 Frog   649 AFMIQEEYVDQVSGLSDKKFQRPNDFSPAFRFGTVPNGSTERNIRNNYLEMHSYMVKFNQRSVQD 713

  Fly   824 GVAAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSW--YAMTGYGLAFSRNSKYVQMFNKRLL 886
            .:.::..|.||:||||..||:|:..:||.|:|:|:||.  :|.||||:|..::|.:.:..:..:|
 Frog   714 ALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFATTGYGIAIQKDSGWKRQVDLAIL 778

  Fly   887 EFRANGDLERLRRYWMTGTCRPGKQEHKSSDPLALEQFLSAFLLLMAGILLAALLLLLEHVYFKY 951
            :...:|::|.|...|:||.|...|.|..||. |.::.....|.:|.|.:.|:.:..::||::|..
 Frog   779 QLFGDGEMEELEALWLTGICHNEKNEVMSSQ-LDIDNMAGVFYMLAAAMALSLITFIMEHLFFWQ 842

  Fly   952 IRKRLAKKDGGHC----CA-----LISLSMGKSLTFRGAVFEATEILKKHRCNDP---ICDTHLW 1004
            :|         ||    |:     :.|:|.|......|...|.    ::...|.|   :.:||  
 Frog   843 LR---------HCFMGVCSGKPGVVFSISRGIYSCIHGVPIED----RQSAMNSPSATMNNTH-- 892

  Fly  1005 KVKHELDMSRLRVRQLEKVMDKHGIK-APQLRL------ASSSDLLNHH---------------- 1046
                 .::.|| :|..:.:.:..|:. :||..|      :|..|:..|.                
 Frog   893 -----SNILRL-LRTAKNMANLSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSFQPEEN 951

  Fly  1047 ----HLKERPPLLGNLSLAAS 1063
                ::.|.....|||.|..|
 Frog   952 LFSDYISEVERTFGNLQLKDS 972

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 92/376 (24%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 167/411 (41%)
Lig_chan 665..928 CDD:278489 100/264 (38%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601 91/371 (25%)
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 167/411 (41%)
NMDAR2_C 837..1449 CDD:402274 31/157 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 221 1.000 Domainoid score I2551
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 452 1.000 Inparanoid score I1565
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D279143at33208
OrthoFinder 1 1.000 - - FOG0000775
OrthoInspector 1 1.000 - - otm48169
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.070

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