DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and si:dkey-183j2.10

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:XP_001923977.1 Gene:si:dkey-183j2.10 / 100151589 ZFINID:ZDB-GENE-130530-729 Length:465 Species:Danio rerio


Alignment Length:433 Identity:118/433 - (27%)
Similarity:195/433 - (45%) Gaps:56/433 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   565 GFCIDLLEKFAEELGFTYELVRVEDGKWGTL-ENGKWNGLIADLVNRKTDMVLTSLMINTEREAV 628
            |:|:|||.:.|::|||.|::..|:||.:|.. |||.|||:|.::|..:.|:.:..|.:...||..
Zfish    51 GYCMDLLTELAKKLGFKYKVHLVKDGSYGRQDENGNWNGMIGEVVRGEADLAVAPLTLTAAREKA 115

  Fly   629 VDFSEPFMETGIAIVVAKRTGIISPTA----FLEPFDTASWMLVGIVAIQAATFMIFLFEWLSPS 689
            |..::|:|:|||:|::  |..|:|..|    ||.||...:|..: ::|.......|.:...|||.
Zfish   116 VGMTKPYMQTGISILL--RKDIVSEEAGFFDFLSPFSGETWFGI-LIAYFVTAVCICIVGRLSPC 177

  Fly   690 GYDMKLYLQNTNVTPYRFSLFRTYWLVWAVLF--QAAVHVDSPRGFTSRFMTNVWALFAVVFLAI 752
            .:      ......|..|:|..:.|.....|.  .|..|   |:..:.|.::..|.|||||.||.
Zfish   178 EW------SQPETEPNHFTLLHSLWYTAGALSLQGAGPH---PKAVSGRVISCTWWLFAVVLLAC 233

  Fly   753 YTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTIHKYFNVMHN--YMRQ 815
            |.::|::...:........|..|      .:::...::||:..|.|.:    :|...:|  |.|.
Zfish   234 YFSSLSSTQGSDSAPLMIKGFED------LANQDVIEYGTLAGSSTLA----FFKNSNNPSYRRI 288

  Fly   816 YNK--------TSVADGVAAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAFS 872
            |..        :|:.:||.....||. :||.:...||..||:  .|.|:.......|.||.:...
Zfish   289 YEHMERRKSFVSSMDEGVQKAKEGNY-AFIGESVSLDLAVAR--HCELVRAHEVIGMRGYSIVTP 350

  Fly   873 RNSKYVQMFNKRLLEFRANGDLERLRRYWMTGTCRPGKQEHKSSDPLALEQFLSAFLLLMAGILL 937
            ..|..::..:..:|:....|:|..||..|...:|.|   ::..:..|........||:|..|:.:
Zfish   351 LGSAMLKNLSVAILQLSEAGELAYLRTKWWASSCLP---DNAKASSLRAHSMKGIFLVLAIGLGI 412

  Fly   938 AALLLLLEHVYFKYIRKRLA----KKDGGHCCALISLSMGKSL 976
            ..||.|.|..    .:.|.|    ||.   ||.:::..:.:.|
Zfish   413 GVLLSLFELT----TKSRSAAGEQKKS---CCTVLTQELSQRL 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 101/359 (28%)
Lig_chan 665..928 CDD:278489 62/274 (23%)
si:dkey-183j2.10XP_001923977.1 PBP2_iGluR_non_NMDA_like 28..381 CDD:270403 100/354 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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