DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and grik6

DIOPT Version :10

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:XP_021335521.1 Gene:grik6 / 100151589 ZFINID:ZDB-GENE-130530-729 Length:465 Species:Danio rerio


Alignment Length:433 Identity:118/433 - (27%)
Similarity:195/433 - (45%) Gaps:56/433 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   565 GFCIDLLEKFAEELGFTYELVRVEDGKWGTL-ENGKWNGLIADLVNRKTDMVLTSLMINTEREAV 628
            |:|:|||.:.|::|||.|::..|:||.:|.. |||.|||:|.::|..:.|:.:..|.:...||..
Zfish    51 GYCMDLLTELAKKLGFKYKVHLVKDGSYGRQDENGNWNGMIGEVVRGEADLAVAPLTLTAAREKA 115

  Fly   629 VDFSEPFMETGIAIVVAKRTGIISPTA----FLEPFDTASWMLVGIVAIQAATFMIFLFEWLSPS 689
            |..::|:|:|||:|::  |..|:|..|    ||.||...:|..: ::|.......|.:...|||.
Zfish   116 VGMTKPYMQTGISILL--RKDIVSEEAGFFDFLSPFSGETWFGI-LIAYFVTAVCICIVGRLSPC 177

  Fly   690 GYDMKLYLQNTNVTPYRFSLFRTYWLVWAVLF--QAAVHVDSPRGFTSRFMTNVWALFAVVFLAI 752
            .:      ......|..|:|..:.|.....|.  .|..|   |:..:.|.::..|.|||||.||.
Zfish   178 EW------SQPETEPNHFTLLHSLWYTAGALSLQGAGPH---PKAVSGRVISCTWWLFAVVLLAC 233

  Fly   753 YTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTIHKYFNVMHN--YMRQ 815
            |.::|::...:........|..|      .:::...::||:..|.|.:    :|...:|  |.|.
Zfish   234 YFSSLSSTQGSDSAPLMIKGFED------LANQDVIEYGTLAGSSTLA----FFKNSNNPSYRRI 288

  Fly   816 YNK--------TSVADGVAAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAFS 872
            |..        :|:.:||.....||. :||.:...||..||:  .|.|:.......|.||.:...
Zfish   289 YEHMERRKSFVSSMDEGVQKAKEGNY-AFIGESVSLDLAVAR--HCELVRAHEVIGMRGYSIVTP 350

  Fly   873 RNSKYVQMFNKRLLEFRANGDLERLRRYWMTGTCRPGKQEHKSSDPLALEQFLSAFLLLMAGILL 937
            ..|..::..:..:|:....|:|..||..|...:|.|   ::..:..|........||:|..|:.:
Zfish   351 LGSAMLKNLSVAILQLSEAGELAYLRTKWWASSCLP---DNAKASSLRAHSMKGIFLVLAIGLGI 412

  Fly   938 AALLLLLEHVYFKYIRKRLA----KKDGGHCCALISLSMGKSL 976
            ..||.|.|..    .:.|.|    ||.   ||.:::..:.:.|
Zfish   413 GVLLSLFELT----TKSRSAAGEQKKS---CCTVLTQELSQRL 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..485 CDD:380601
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 101/359 (28%)
grik6XP_021335521.1 PBP2_iGluR_non_NMDA_like 28..381 CDD:270403 100/354 (28%)
Blue background indicates that the domain is not in the aligned region.

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