DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar2 and LOC100149482

DIOPT Version :9

Sequence 1:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster
Sequence 2:XP_009290417.1 Gene:LOC100149482 / 100149482 -ID:- Length:1959 Species:Danio rerio


Alignment Length:988 Identity:299/988 - (30%)
Similarity:485/988 - (49%) Gaps:141/988 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PIATLNTASCQHNSTTSRRKRILTPP----SGPISLLLLTVLTLLILDTRSCQGLRLTNGGGSLS 91
            |..:|..|..:....||....:|..|    ..|::.:...:..:              :.|.::.
Zfish     5 PTLSLLLALVEWAGQTSSSPHLLLRPRERERDPVASMHFNIAVI--------------HAGSTVQ 55

  Fly    92 KG-----AAANKEQLNIGLIAPHTNFGKREYLRSINNAVTGLTKTRGAKLTFLKDYSFEQKNIHF 151
            :|     |||.:        .|:..||:..  .|...:|  :|:...|.:.:|      |.|   
Zfish    56 QGEAGAAAAAGR--------VPYPGFGRVH--SSFGESV--VTQWGSANVIWL------QVN--- 99

  Fly   152 DMMSLTPSPTAILSTLCKEFLRVNVSAILYMMNNEQFGHSTASAQYFLQ-LAGYLGIPVISWNAD 215
                 ..||..:||.||.......:..::| .:......:|......|: ::...|:|:::... 
Zfish   100 -----DSSPRTLLSQLCDLLAARPLQGLVY-EDERPLPLATGPLAPMLEFVSAQTGLPIVAVGG- 157

  Fly   216 NSGLERRASQS-TLQLQLAPSIEHQSAAMLSILERYKWHQFSVVTSQIAGHDDFVQAVRERVAEM 279
            .:.|.|...:| ::.||.:.|...|...:..:||.|.|..||||:::..|:.||:..| |.:.:.
Zfish   158 GAALGRVPQESGSIFLQFSSSTALQLEVIFEVLEEYDWTAFSVVSTRHHGYQDFLSVV-EGLTDG 221

  Fly   280 Q----EHFKFTILNSIVVT------RTSDLMELVNSEARVMLLYATQTEAITILRAAEEMKLTGE 334
            .    |.....:||   :|      ||..|::  .:||:|.|||.:|.||..:..||......|.
Zfish   222 SFIGWEKKSIVMLN---LTDDPGGVRTQRLLK--ENEAQVRLLYCSQEEAEQVFLAAWAAGQAGA 281

  Fly   335 NYVW-VVSQSVIEKKDAHSQFPVGMLGVH---FDTSSAALMNE----ISNAIKIYSYGVEAYLTD 391
            :::| .|..::.|         :|:.|:.   |........:|    |:..:.|.::|..|...|
Zfish   282 SHIWFAVGPALSE---------LGLTGLPKRLFAVRPQGWRDEPRRRIARGVSILTHGAVALRKD 337

  Fly   392 -PANRDRRLTTQSLSCEDEG------RGRWDNGEIFFKYLRNVSIEGDLNKPNIEFTADGDLRSA 449
             .|.......|   :|:.:|      |||       .:|..|:::.|    .:..|:.:|.|.:.
Zfish   338 YGATGGPHFVT---NCQTDGNRTQRIRGR-------MRYFSNITLGG----RDYSFSNEGYLANP 388

  Fly   450 ELKIMNLRPSANNKNLVWEEIGVWKSWETQKLDIRDIAWP--GNSHAPPQGVPEKFHLKITFLEE 512
            .|.:::..|.:.     ||::| |  ||...|.:|..||.  |....||.   :..||::..|||
Zfish   389 FLDVISYTPGSG-----WEDVG-W--WENGVLRLRYPAWSRYGPFLQPPD---DAQHLRVVTLEE 442

  Fly   513 APYINLSPADPVSGKCLMDRGVLCR----VAADHEMAADIDVGQAHRNESFYQCCSGFCIDLLEK 573
            .|::.:..||..||.|:.| .|.||    .:|..|..|.:.           |||.|||||:|::
Zfish   443 RPFVIVELADAASGTCIRD-SVPCRRPLNASALQEGVAPVK-----------QCCKGFCIDILKR 495

  Fly   574 FAEELGFTYELVRVEDGKWGTLENGKWNGLIADLVNRKTDMVLTSLMINTEREAVVDFSEPFMET 638
            .|..:||||:|..|.:||.|...:|.|||::.::|.::.||.:.||.||.||..|||||.||:||
Zfish   496 LARIVGFTYDLYLVTNGKHGKKIDGVWNGMVGEVVYKRADMAIGSLTINEERSEVVDFSVPFVET 560

  Fly   639 GIAIVVAKRTGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNVT 703
            ||:::|::..|.:||:|||||:..|.|:::.::.:......:|:||:.||.||:..|. ......
Zfish   561 GISVMVSRSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFIFEFFSPVGYNRSLQ-SGKKAG 624

  Fly   704 PYRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANLAAFMITREEFH 768
            ..:|::.::.||:||::|..:|.|::|:|.||:.|..|||.|||:|||.||||||||||..|...
Zfish   625 GSKFTIGKSIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYID 689

  Fly   769 EFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTIHKYFNVMHNYMRQYNKTSVADGVAAVLNGNL 833
            ..|||:|.:..||....|..||||:|...|:..|...:..||.||.:||:.||.|.::.:..|.|
Zfish   690 TVSGLSDKKFQHPTEQYPPLKFGTVPNGSTEKNIRSNYPDMHQYMVKYNQKSVEDAISHLKTGKL 754

  Fly   834 DSFIYDGTVLDYLVAQDEDCRLMTVGSW--YAMTGYGLAFSRNSKYVQMFNKRLLEFRANGDLER 896
            |:||||..||:|:..:||.|::||:||.  :|.||||:|..:||::.:..:..||:...:.::|.
Zfish   755 DAFIYDAAVLNYMARKDEGCKVMTIGSGKVFATTGYGIALIKNSRWKRPLDLALLQLVGDDEIEM 819

  Fly   897 LRRYWMTGTCRPGKQEHKSSDPLALEQFLSAFLLLMAGILLAALLLLLEHVYFKYIRKRLAKK-D 960
            |.|.|::|.|...|.|..|| .|.::.....|.:|:..:.|:.|:...||:.:..:|..::|. .
Zfish   820 LERLWLSGICHNDKIEVMSS-KLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWRLRHCMSKMGQ 883

  Fly   961 GGHCCALISLSMG 973
            .|....|::.|.|
Zfish   884 SGKLDFLLAFSRG 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 97/419 (23%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 169/411 (41%)
Lig_chan 665..928 CDD:278489 103/264 (39%)
LOC100149482XP_009290417.1 PBP1_iGluR_NMDA_NR2 44..421 CDD:107373 102/455 (22%)
PBP2_iGluR_NMDA_Nr2 433..831 CDD:270436 169/410 (41%)
HisJ <487..>570 CDD:223904 41/82 (50%)
Lig_chan 585..857 CDD:278489 106/273 (39%)
NMDAR2_C 868..>900 CDD:287527 7/29 (24%)
FAM76 <1763..>1856 CDD:292665
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591780
Domainoid 1 1.000 218 1.000 Domainoid score I2585
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D279143at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm24466
orthoMCL 1 0.900 - - OOG6_102799
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.710

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