DRSC/TRiP Functional Genomics Resources

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Protein Alignment sta and rpsa

DIOPT Version :9

Sequence 1:NP_001284785.1 Gene:sta / 31106 FlyBaseID:FBgn0003517 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_989068.1 Gene:rpsa / 394665 XenbaseID:XB-GENE-972235 Length:306 Species:Xenopus tropicalis


Alignment Length:291 Identity:174/291 - (59%)
Similarity:204/291 - (70%) Gaps:27/291 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAI 65
            ||||||:|.:||:|:.|.|.|.||||..|::||||||:|||::||:.|:||.:|||||.||||||
 Frog     1 MSGGLDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAI 65

  Fly    66 VAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTD 130
            |||:||:|:.|||||..|||||||||..:..||||||||||.||||||.|||||||||||||..|
 Frog    66 VAIENPADVCVISSRNTGQRAVLKFASASGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRAD 130

  Fly   131 HQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEW 195
            |||:.||||||||.||..||||||||:|||||||||.|||:|||||:|||||||:||||||...|
 Frog   131 HQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPW 195

  Fly   196 PVVVDLFFYRDPEEAEKEEAAAKELLPPPKIEE--------AVDHPVEETTNWADEVAAETV--- 249
            .|:.||:|||||||.||||.||.|.....  ||        ..:.|..|..:|::.|...:|   
 Frog   196 EVMPDLYFYRDPEEIEKEEQAAAEKATTK--EEYQGEWTAPVAEFPQAEVADWSEGVQVPSVPIQ 258

  Fly   250 -------------GGVEDWNEDTVKT-SWGS 266
                         ...|||:.....| .|.:
 Frog   259 QFPAERPEIPAAKPAAEDWSSQPASTDDWSA 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
staNP_001284785.1 PTZ00254 1..247 CDD:240331 168/253 (66%)
rpsaNP_989068.1 PTZ00254 1..249 CDD:240331 167/249 (67%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 161..180 15/18 (83%)
40S_SA_C 202..306 CDD:374378 26/90 (29%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 205..229 14/25 (56%)
[DE]-W-[ST] 1 230..232 0/1 (0%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 242..306 9/48 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 261..306 5/29 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 138 1.000 Domainoid score I4817
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68249
Inparanoid 1 1.050 343 1.000 Inparanoid score I2283
OMA 1 1.010 - - QHG53661
OrthoDB 1 1.010 - - D1129610at2759
OrthoFinder 1 1.000 - - FOG0003206
OrthoInspector 1 1.000 - - oto103950
Panther 1 1.100 - - LDO PTHR11489
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2274
SonicParanoid 1 1.000 - - X2156
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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