DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sta and rpsa

DIOPT Version :9

Sequence 1:NP_001284785.1 Gene:sta / 31106 FlyBaseID:FBgn0003517 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_957346.1 Gene:rpsa / 394027 ZFINID:ZDB-GENE-040426-811 Length:308 Species:Danio rerio


Alignment Length:297 Identity:174/297 - (58%)
Similarity:202/297 - (68%) Gaps:37/297 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAI 65
            ||||||:|.:||:|:.|.|.|.||||..|::||||||||||::|||.|:||.||||||.||||||
Zfish     1 MSGGLDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYVYKRKSDGVYIINLKKTWEKLLLAARAI 65

  Fly    66 VAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTD 130
            |||:||:|:.|||||..|||||||||..|.:|..|||||||.||||||.||||||||:||||..|
Zfish    66 VAIENPADVCVISSRNTGQRAVLKFASATGSTTFAGRFTPGTFTNQIQAAFREPRLLIVTDPRAD 130

  Fly   131 HQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEW 195
            |||:.||||||||.||..||||||||:|||||||||..||:|||||:|||||||:||||||...|
Zfish   131 HQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGPHSVGLMWWMLAREVLRMRGTISREHPW 195

  Fly   196 PVVVDLFFYRDPEEAEKEEAAAKE------------LLPPPKIEEAVDHPVEETTNWADEVAAET 248
            .|:.||:|||||||.||||.||.|            ..|.|      |....|..:|::.|...:
Zfish   196 EVMPDLYFYRDPEEIEKEEQAAAEKAVGKEEFQGEWTAPVP------DFNQPEVADWSEGVQVPS 254

  Fly   249 V------GGV-------------EDWNEDTVKTSWGS 266
            |      .|:             |||:.......|.:
Zfish   255 VPIQQFPAGIEAPGKPAPAEVYAEDWSAQPATEDWSA 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
staNP_001284785.1 PTZ00254 1..247 CDD:240331 168/257 (65%)
rpsaNP_957346.1 PTZ00254 1..249 CDD:240331 167/253 (66%)
uS2_euk_arch 10..206 CDD:273394 143/195 (73%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 161..180 14/18 (78%)
40S_SA_C 202..308 CDD:292740 26/96 (27%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 205..229 12/23 (52%)
[DE]-W-[ST] 1 230..232 0/1 (0%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 242..308 9/50 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 262..308 5/30 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592950
Domainoid 1 1.000 137 1.000 Domainoid score I4866
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68249
Inparanoid 1 1.050 337 1.000 Inparanoid score I2365
OMA 1 1.010 - - QHG53661
OrthoDB 1 1.010 - - D1129610at2759
OrthoFinder 1 1.000 - - FOG0003206
OrthoInspector 1 1.000 - - oto39158
orthoMCL 1 0.900 - - OOG6_100806
Panther 1 1.100 - - LDO PTHR11489
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2274
SonicParanoid 1 1.000 - - X2156
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

Return to query results.
Submit another query.