DRSC/TRiP Functional Genomics Resources

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Protein Alignment sta and rpsa

DIOPT Version :10

Sequence 1:NP_476750.1 Gene:sta / 31106 FlyBaseID:FBgn0003517 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_957346.1 Gene:rpsa / 394027 ZFINID:ZDB-GENE-040426-811 Length:308 Species:Danio rerio


Alignment Length:297 Identity:174/297 - (58%)
Similarity:202/297 - (68%) Gaps:37/297 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAI 65
            ||||||:|.:||:|:.|.|.|.||||..|::||||||||||::|||.|:||.||||||.||||||
Zfish     1 MSGGLDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYVYKRKSDGVYIINLKKTWEKLLLAARAI 65

  Fly    66 VAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTD 130
            |||:||:|:.|||||..|||||||||..|.:|..|||||||.||||||.||||||||:||||..|
Zfish    66 VAIENPADVCVISSRNTGQRAVLKFASATGSTTFAGRFTPGTFTNQIQAAFREPRLLIVTDPRAD 130

  Fly   131 HQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEW 195
            |||:.||||||||.||..||||||||:|||||||||..||:|||||:|||||||:||||||...|
Zfish   131 HQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGPHSVGLMWWMLAREVLRMRGTISREHPW 195

  Fly   196 PVVVDLFFYRDPEEAEKEEAAAKE------------LLPPPKIEEAVDHPVEETTNWADEVAAET 248
            .|:.||:|||||||.||||.||.|            ..|.|      |....|..:|::.|...:
Zfish   196 EVMPDLYFYRDPEEIEKEEQAAAEKAVGKEEFQGEWTAPVP------DFNQPEVADWSEGVQVPS 254

  Fly   249 V------GGV-------------EDWNEDTVKTSWGS 266
            |      .|:             |||:.......|.:
Zfish   255 VPIQQFPAGIEAPGKPAPAEVYAEDWSAQPATEDWSA 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
staNP_476750.1 PTZ00254 1..247 CDD:240331 168/257 (65%)
rpsaNP_957346.1 PTZ00254 1..249 CDD:240331 167/253 (66%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 161..180 14/18 (78%)
40S_SA_C 202..308 CDD:465029 26/96 (27%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 205..229 12/23 (52%)
[DE]-W-[ST] 1 230..232 0/1 (0%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 242..308 9/50 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 262..308 5/30 (17%)

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