DRSC/TRiP Functional Genomics Resources

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Protein Alignment sta and Rpsa

DIOPT Version :9

Sequence 1:NP_001284785.1 Gene:sta / 31106 FlyBaseID:FBgn0003517 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_035159.3 Gene:Rpsa / 16785 MGIID:105381 Length:295 Species:Mus musculus


Alignment Length:282 Identity:173/282 - (61%)
Similarity:203/282 - (71%) Gaps:20/282 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAI 65
            |||.||:|.:||:|:.|.|.|.||||..|::||||||:|||::||:.|:||.:|||||.||||||
Mouse     1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAI 65

  Fly    66 VAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTD 130
            |||:||:|:.|||||..|||||||||..|..||||||||||.||||||.|||||||||||||..|
Mouse    66 VAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRAD 130

  Fly   131 HQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEW 195
            |||:.||||||:|.||..||||||||:|||||||||.|||:|||||:|||||||:||||||...|
Mouse   131 HQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPW 195

  Fly   196 PVVVDLFFYRDPEEAEKEEAAAKE------------LLPPPKIEEAVDHPVEETTNWADEVAAET 248
            .|:.||:|||||||.||||.||.|            ..|.|:...|  .|  |..:|::.|...:
Mouse   196 EVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAA--QP--EVADWSEGVQVPS 256

  Fly   249 VG----GVEDWNEDTVKTSWGS 266
            |.    ..|||:.......|.:
Mouse   257 VPIQQFPTEDWSAQPATEDWSA 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
staNP_001284785.1 PTZ00254 1..247 CDD:240331 168/257 (65%)
RpsaNP_035159.3 PTZ00254 1..250 CDD:240331 167/252 (66%)
Interaction with PPP1R16B. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 54..113 46/58 (79%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 161..180 15/18 (83%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 205..229 12/23 (52%)
[DE]-W-[ST] 1 230..232 0/1 (0%)
Laminin-binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03016 242..295 9/39 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 266..295 3/13 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847599
Domainoid 1 1.000 139 1.000 Domainoid score I4798
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68249
Inparanoid 1 1.050 342 1.000 Inparanoid score I2334
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53661
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003206
OrthoInspector 1 1.000 - - oto93727
orthoMCL 1 0.900 - - OOG6_100806
Panther 1 1.100 - - LDO PTHR11489
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2274
SonicParanoid 1 1.000 - - X2156
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.930

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