DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab27 and RAB8C

DIOPT Version :9

Sequence 1:NP_726743.1 Gene:Rab27 / 31103 FlyBaseID:FBgn0025382 Length:236 Species:Drosophila melanogaster
Sequence 2:NP_195972.1 Gene:RAB8C / 831817 AraportID:AT5G03520 Length:216 Species:Arabidopsis thaliana


Alignment Length:170 Identity:74/170 - (43%)
Similarity:110/170 - (64%) Gaps:6/170 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 QFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWDTAGQERF 83
            :.|::|||||||:|||.:::|..|.|.||:|:||||:.:.:..:.:    ||.||||||||||||
plant    17 KLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGK----RIKLQIWDTAGQERF 77

  Fly    84 RSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQ-LRVVSR 147
            |::|||:||.|||.||::|:|.|.||....||:..:..|| |::.:.:|.|||.|:.: .|.|..
plant    78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHA-SDNVNKILVGNKADMDESKRAVPT 141

  Fly   148 DQVAALCRRYRLPYIETSACTGANVKEAVELLVGRVMERI 187
            .:..||...|.:.:.||||.|..||:.....:...:.:|:
plant   142 AKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRL 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab27NP_726743.1 P-loop_NTPase 19..187 CDD:304359 73/168 (43%)
RAB 20..186 CDD:197555 73/166 (44%)
RAB8CNP_195972.1 Rab8_Rab10_Rab13_like 13..180 CDD:206659 73/167 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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