DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab27 and RAB3B

DIOPT Version :10

Sequence 1:NP_726743.1 Gene:Rab27 / 31103 FlyBaseID:FBgn0025382 Length:236 Species:Drosophila melanogaster
Sequence 2:NP_002858.2 Gene:RAB3B / 5865 HGNCID:9778 Length:219 Species:Homo sapiens


Alignment Length:217 Identity:83/217 - (38%)
Similarity:130/217 - (59%) Gaps:25/217 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 QFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRH--RIHLQIWDTAGQE 81
            :.|::|:|.||||..|::|.|..|...|:|||||||:.|.:.      ||  |:.||||||||||
Human    24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVY------RHEKRVKLQIWDTAGQE 82

  Fly    82 RFRSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVS 146
            |:|::|||:||.||||:|::|:|:|:||....:|.:|::|::: ::..|:|.|||||:.:.|||.
Human    83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW-DNAQVILVGNKCDMEEERVVP 146

  Fly   147 RDQVAALCRRYRLPYIETSACTGANVKEAVELLVGRVMERIENAACNREFSLLLTQSRCLPNIAY 211
            .::...|..:....:.|.||....:|::|        .||:.:|.|::....|.|....|     
Human   147 TEKGQLLAEQLGFDFFEASAKENISVRQA--------FERLVDAICDKMSDSLDTDPSML----- 198

  Fly   212 GQPEDLVRLHDRREEPCSRRNC 233
            |..:: .||.|  ..|..::||
Human   199 GSSKN-TRLSD--TPPLLQQNC 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab27NP_726743.1 P-loop containing Nucleoside Triphosphate Hydrolases 19..187 CDD:476819 70/169 (41%)
RAB3BNP_002858.2 Rab3 22..186 CDD:206657 73/176 (41%)
Switch 1. /evidence=ECO:0000269|PubMed:35871249, ECO:0007744|PDB:8A4B 45..58 6/12 (50%)
Switch 2. /evidence=ECO:0000269|PubMed:35871249, ECO:0007744|PDB:8A4B 78..96 12/17 (71%)

Return to query results.
Submit another query.