DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab27 and rab1aa

DIOPT Version :10

Sequence 1:NP_726743.1 Gene:Rab27 / 31103 FlyBaseID:FBgn0025382 Length:236 Species:Drosophila melanogaster
Sequence 2:NP_001313450.1 Gene:rab1aa / 566914 ZFINID:ZDB-GENE-090312-110 Length:201 Species:Danio rerio


Alignment Length:169 Identity:64/169 - (37%)
Similarity:108/169 - (63%) Gaps:5/169 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 QFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWDTAGQERF 83
            :.|::|||||||:|||.::.|..:...:|||:|:||:.:.:..:.:    .|.||||||||||||
Zfish    10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK----TIKLQIWDTAGQERF 70

  Fly    84 RSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVSRD 148
            |::|:::||.|.|.::::|:|.::||.....||.::..:| ||:.:.:|.||||||...:||...
Zfish    71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYT 134

  Fly   149 QVAALCRRYRLPYIETSACTGANVKEAVELLVGRVMERI 187
            ..........:|::||||.:..||::|...:...:.:|:
Zfish   135 AAKEFADSLSIPFLETSAKSSTNVEQAFMTMAAEIKKRM 173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab27NP_726743.1 P-loop containing Nucleoside Triphosphate Hydrolases 19..187 CDD:476819 63/167 (38%)
rab1aaNP_001313450.1 Rab1_Ypt1 7..172 CDD:206661 63/166 (38%)

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