DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab27 and Rab18

DIOPT Version :9

Sequence 1:NP_726743.1 Gene:Rab27 / 31103 FlyBaseID:FBgn0025382 Length:236 Species:Drosophila melanogaster
Sequence 2:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster


Alignment Length:203 Identity:71/203 - (34%)
Similarity:118/203 - (58%) Gaps:18/203 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LAGSGEQFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWDT 77
            :|....:.||:|:|||||:.|:.::.:.:|......|:|:||:.|.:..:  |..:::.|  |||
  Fly     1 MADRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVD--GIDYKVAL--WDT 61

  Fly    78 AGQERFRSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPD--VVLCGNKCDLL 140
            ||.|||||||.:|||.|:|.:|::|:||..|.::...||::|  .:||::|:  :::.|||.|  
  Fly    62 AGAERFRSLTPSFYRKALGAILVYDITSRDSLVKLETWLAEL--DSYSDNPNIAIIVVGNKID-- 122

  Fly   141 QLRVVSRDQVAALCRRYRLPYIETSACTGANV----KEAVELLVGRVMERIENAACNREFS---- 197
            :.|||.|::.....|::|..:|||||.....|    |:.||.:|........||:...:.:    
  Fly   123 EERVVDREEGRKFARKHRALFIETSAKCDQFVSDVFKDVVEKIVSSEYFNNGNASAGLDIASDRD 187

  Fly   198 LLLTQSRC 205
            |..:.|.|
  Fly   188 LEASASTC 195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab27NP_726743.1 P-loop_NTPase 19..187 CDD:304359 65/173 (38%)
RAB 20..186 CDD:197555 65/171 (38%)
Rab18NP_524744.2 RAB 6..166 CDD:197555 64/167 (38%)
Rab18 6..165 CDD:206656 64/166 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454539
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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