DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab27 and rab3db

DIOPT Version :10

Sequence 1:NP_726743.1 Gene:Rab27 / 31103 FlyBaseID:FBgn0025382 Length:236 Species:Drosophila melanogaster
Sequence 2:XP_005168533.1 Gene:rab3db / 436952 ZFINID:ZDB-GENE-040718-428 Length:231 Species:Danio rerio


Alignment Length:185 Identity:76/185 - (41%)
Similarity:116/185 - (62%) Gaps:11/185 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 EPLQLAGSGEQF------LVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRR 67
            :|.|...:.:.|      |::|:|.||||..|::|.|..|.:.|:|||||||:.|.:..|::   
Zfish    21 QPSQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNNK--- 82

  Fly    68 HRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPDVVL 132
             ||.|||||||||||:|::|||:||.||||||:||:|:..||....:|.:|::|::: ::..|:|
Zfish    83 -RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMFDITNRDSFNAVRDWATQIKTYSW-DNAQVIL 145

  Fly   133 CGNKCDLLQLRVVSRDQVAALCRRYRLPYIETSACTGANVKEAVELLVGRVMERI 187
            .||||||...|::..:....|.......:.|.||....|||:..|.||..:.:::
Zfish   146 VGNKCDLEDERLIPTEDSQRLAHELGFQFFEASAKDSINVKQVFECLVDVICDKM 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab27NP_726743.1 P-loop containing Nucleoside Triphosphate Hydrolases 19..187 CDD:476819 74/173 (43%)
rab3dbXP_005168533.1 P-loop containing Nucleoside Triphosphate Hydrolases 35..199 CDD:476819 73/168 (43%)

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