DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab27 and rab13

DIOPT Version :10

Sequence 1:NP_726743.1 Gene:Rab27 / 31103 FlyBaseID:FBgn0025382 Length:236 Species:Drosophila melanogaster
Sequence 2:NP_958486.1 Gene:rab13 / 373105 ZFINID:ZDB-GENE-030826-30 Length:200 Species:Danio rerio


Alignment Length:194 Identity:74/194 - (38%)
Similarity:120/194 - (61%) Gaps:11/194 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 QFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWDTAGQERF 83
            :.|::||||||||||:.::.:..|::.:|||:||||:.|.:....:    ::.||:|||||||||
Zfish    10 KLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKVKTIEVEGK----KVKLQVWDTAGQERF 70

  Fly    84 RSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVSRD 148
            :::|||:||.|||.:|::|:|.|||:....||:..::.:| |.....:|.|||||:...|.||::
Zfish    71 KTITTAYYRGAMGIILVYDITDEKSYENIQNWMKSIKENA-SAGVSRMLLGNKCDIEAKRKVSKE 134

  Fly   149 QVAALCRRYRLPYIETSACTGANVKEAVELLVGRVMERIEN--AACNREFSLLLTQ----SRCL 206
            ....|.:.:.:.:.||||.:..||:|:...|...::.:...  ....||..|..|:    |:||
Zfish   135 TGEKLAKEHGIRFFETSAKSSINVEESFTSLARDILLKSNKKPGPSGREVKLTSTEKKSSSKCL 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab27NP_726743.1 P-loop containing Nucleoside Triphosphate Hydrolases 19..187 CDD:476819 67/167 (40%)
rab13NP_958486.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 67/166 (40%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 31..45 6/13 (46%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 63..80 12/16 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..195 4/21 (19%)

Return to query results.
Submit another query.