DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab27 and Rab3c

DIOPT Version :10

Sequence 1:NP_726743.1 Gene:Rab27 / 31103 FlyBaseID:FBgn0025382 Length:236 Species:Drosophila melanogaster
Sequence 2:NP_598220.2 Gene:Rab3c / 171058 RGDID:620923 Length:227 Species:Rattus norvegicus


Alignment Length:198 Identity:78/198 - (39%)
Similarity:124/198 - (62%) Gaps:22/198 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 PLQLAGSGE-----------------QFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREK 57
            |:|:|.:.:                 :.|::|:|.||||..|::|.|..|.:.|:|||||||:.|
  Rat     6 PMQMASAQDARFGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK 70

  Fly    58 RLLYNSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTH 122
            .:..|.:    ||.|||||||||||:|::|||:||.||||:|::|:|:|:||....:|.:|::|:
  Rat    71 TVFKNEK----RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY 131

  Fly   123 AYSEDPDVVLCGNKCDLLQLRVVSRDQVAALCRRYRLPYIETSACTGANVKEAVELLVGRVMERI 187
            :: ::..|:|.|||||:...||||.::...|..:....:.||||....|||:..|.||..:.:::
  Rat   132 SW-DNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKM 195

  Fly   188 ENA 190
            ..:
  Rat   196 SES 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab27NP_726743.1 P-loop containing Nucleoside Triphosphate Hydrolases 19..187 CDD:476819 75/167 (45%)
Rab3cNP_598220.2 Rab3 30..194 CDD:206657 75/168 (45%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P10949 53..66 6/12 (50%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P10949 86..104 12/17 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 202..227
Blue background indicates that the domain is not in the aligned region.

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