DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab27 and rab8b

DIOPT Version :10

Sequence 1:NP_726743.1 Gene:Rab27 / 31103 FlyBaseID:FBgn0025382 Length:236 Species:Drosophila melanogaster
Sequence 2:NP_001092729.1 Gene:rab8b / 100093706 ZFINID:ZDB-GENE-070620-16 Length:209 Species:Danio rerio


Alignment Length:198 Identity:83/198 - (41%)
Similarity:128/198 - (64%) Gaps:22/198 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 QFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWDTAGQERF 83
            :.|::|||||||||||:::::..|:|.||||:||||:.:.:..:.:    :|.||||||||||||
Zfish    10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGK----KIKLQIWDTAGQERF 70

  Fly    84 RSLTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVSRD 148
            |::|||:||.|||.:|::|:|:||||....||:..:..|| |.|.:.::.|||||:...|.||::
Zfish    71 RTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHA-SSDVERMILGNKCDMNDKRQVSKE 134

  Fly   149 QVAALCRRYRLPYIETSACTGANVKEAVELLVGRVMERIENAACNREF------------SLLLT 201
            :...|...|.:.::||||.:..||:||...|...:|.|:     ||:.            ::.:|
Zfish   135 RGEKLAIDYGIKFLETSAKSSTNVEEAFVTLARDIMTRL-----NRKMNENNPSGGGGGGAVKIT 194

  Fly   202 QSR 204
            :||
Zfish   195 ESR 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab27NP_726743.1 P-loop containing Nucleoside Triphosphate Hydrolases 19..187 CDD:476819 77/167 (46%)
rab8bNP_001092729.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 77/166 (46%)

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