DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ns3 and LSG1

DIOPT Version :9

Sequence 1:NP_001284779.1 Gene:Ns3 / 31097 FlyBaseID:FBgn0266284 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_011416.3 Gene:LSG1 / 852779 SGDID:S000003067 Length:640 Species:Saccharomyces cerevisiae


Alignment Length:679 Identity:250/679 - (36%)
Similarity:358/679 - (52%) Gaps:134/679 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KKNKGGAPNLGRQLIKDRFGHTQRRKVDNDTMLHTTELQDGYDWGRLNLSSVTEESSFQAFLRTA 67
            :|||... .|||.:...|........:.:..|..||:..:. :|  :.|.|||:||:...||.||
Yeast    21 RKNKNKL-ELGRAIKYARQKENAIEYLPDGEMRFTTDKHEA-NW--VKLRSVTQESALDEFLSTA 81

  Fly    68 ELAGTEFQAEK-LNITFV-----NPKQRVGLLSKTQEQR--MHQKHDEHRDQLKIPRRPKWTKET 124
            .||..:|.|:: .|:..:     |........|.|.|||  ::.|.......|.:||||:|.:..
Yeast    82 ALADKDFTADRHSNVKIIRMDSGNDSATSQGFSMTNEQRGNLNAKQRALAKDLIVPRRPEWNEGM 146

  Fly   125 SAEELVRAENEAFLDWRRDLALLQE-DEEILMTPYEKNLEFWRQLWRVVERSDVVVQIVDARNPL 188
            |..:|.|.|.||||:|||.||.||| :|::|:||:|:|:|.|:||||||||||:|||||||||||
Yeast   147 SKFQLDRQEKEAFLEWRRKLAHLQESNEDLLLTPFERNIEVWKQLWRVVERSDLVVQIVDARNPL 211

  Fly   189 LFRSADLERYVKEVEPSKMNMILVNKSDLLTEEQRRHWAEYFDSEGIRTAFYSATLVEEELKREA 253
            ||||.||||||||.:..|.|::||||:||||::||..||:||.|:.|...||||....:.|:::.
Yeast   212 LFRSVDLERYVKESDDRKANLLLVNKADLLTKKQRIAWAKYFISKNISFTFYSALRANQLLEKQK 276

  Fly   254 EECLD----SFPEVQQL-----RRAVEEIK-QSLDSVEDALNVIEQKYKTIPETQNDE-LPRLPG 307
            |...|    .|.|..:.     .:.:|::| .|:|.:|:..         :.:..|:. ||.|||
Yeast   277 EMGEDYREQDFEEADKEGFDADEKVMEKVKILSIDQLEELF---------LSKAPNEPLLPPLPG 332

  Fly   308 DKNSPRLLSRLELIEFLRNIYTGPRHTEQHVTVGMVGYPNVGKSSTINSLMTVKKVSVSATPGKT 372
               .|.|                       :.:|:|||||||||||||||:..||||||:|||||
Yeast   333 ---QPPL-----------------------INIGLVGYPNVGKSSTINSLVGAKKVSVSSTPGKT 371

  Fly   373 KRFQTLFLDKDILLCDCPGLVMPSFVLTKADMLLNGILPIDQMRDHVPAVNLLCERIPRHVLEDK 437
            |.|||:.|...::||||||||.|:|...|.:::.||:|||||:||::....|:.||||::.:|..
Yeast   372 KHFQTIKLSDSVMLCDCPGLVFPNFAYNKGELVCNGVLPIDQLRDYIGPAGLVAERIPKYYIEAI 436

  Fly   438 YGIVIAKPLEGE----DMERPPHSEELLLAYGYNRGFMTSN-GQPDQARSARYVLKDYVNGRLLY 497
            |||.|......|    |:   |.::|||:||...||:||.. |..|:.|::||:|||||||:|||
Yeast   437 YGIHIQTKSRDEGGNGDI---PTAQELLVAYARARGYMTQGYGSADEPRASRYILKDYVNGKLLY 498

  Fly   498 AMSPP----SVPQTE------------YHTFPERQRRVIE------------------------- 521
            ...||    ..|.|.            :...|:.::..::                         
Yeast   499 VNPPPHLEDDTPYTREECEEFNKDLYVFDRLPDTRKEQVQNAAKAKGIDIVDLARDLNQLTFSAH 563

  Fly   522 ---------ESQLPGQQQRAMRINKSTSKELDNQFFSDKPTHAHVKGRTNFPNVRLANDGSLVAG 577
                     :|...|.:|.|:   .:.:::||..||...    :|:||.:.|..::.|..   ||
Yeast   564 TGGDTQKEAKSVTHGGKQAAL---YNAAEDLDRDFFKMN----NVEGRLSTPFHKVQNSS---AG 618

  Fly   578 NDPAAKPWRHVKKERREKLRKKFSHLDEH 606
            .       ||.||.:.:..:.|...::.:
Yeast   619 K-------RHNKKNKSKNAKSKVFSIENN 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns3NP_001284779.1 RbgA 161..524 CDD:224083 170/428 (40%)
HSR1_MMR1 164..395 CDD:206750 114/241 (47%)
p10 <270..312 CDD:177631 11/43 (26%)
P-loop_NTPase 313..>357 CDD:304359 15/43 (35%)
LSG1NP_011416.3 RbgA 167..528 CDD:224083 178/398 (45%)
HSR1_MMR1 187..394 CDD:206750 114/241 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344833
Domainoid 1 1.000 200 1.000 Domainoid score I568
eggNOG 1 0.900 - - E1_COG1161
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5917
Inparanoid 1 1.050 369 1.000 Inparanoid score I364
Isobase 1 0.950 - 0 Normalized mean entropy S1757
OMA 1 1.010 - - QHG55394
OrthoFinder 1 1.000 - - FOG0004203
OrthoInspector 1 1.000 - - oto99255
orthoMCL 1 0.900 - - OOG6_101986
Panther 1 1.100 - - LDO PTHR45709
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R664
SonicParanoid 1 1.000 - - X2947
TreeFam 1 0.960 - -
1615.740

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