DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ns3 and AT2G41670

DIOPT Version :10

Sequence 1:NP_569915.1 Gene:Ns3 / 31097 FlyBaseID:FBgn0266284 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_850353.1 Gene:AT2G41670 / 818765 AraportID:AT2G41670 Length:386 Species:Arabidopsis thaliana


Alignment Length:403 Identity:90/403 - (22%)
Similarity:147/403 - (36%) Gaps:141/403 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 SDVVVQIVDARNPLLFRSADLERYVKEVEPSKMNMILVNKSDLLTEEQRRHWAEYFDSEGIRTAF 239
            ||:|:::.|||.||...:.||:..:.    :|..:|.:||.||........|..:|:|       
plant    47 SDLVIEVRDARIPLSSANEDLQSQMS----AKRRIIALNKKDLANPNVLNKWTRHFES------- 100

  Fly   240 YSATLVEEELKREAEECLDSFPEVQQLRRAVEEIKQSLDSVEDALNVIEQKYKTIPETQNDELPR 304
                        ..::|:           |:.  ..|..||...|:::|.|.|.:...:      
plant   101 ------------SKQDCI-----------AIN--AHSRSSVMKLLDLVELKLKEVIARE------ 134

  Fly   305 LPGDKNSPRLLSRLELIEFLRNIYTGPRHTEQHVTVGMVGYPNVGKSSTINSLMTV--------- 360
                   |.||                        |.:||.||||||:.|||:..:         
plant   135 -------PTLL------------------------VMVVGVPNVGKSALINSIHQIAAARFPVQE 168

  Fly   361 --KKVSVSATPGKTKRFQTLFL--DKDILLCDCPGLVMPSF--VLTKADMLLNGILPIDQMRDHV 419
              |:.:|...||.|:......:  ...|.:.|.||:::||.  :.|...:.|:|     .::|.|
plant   169 RLKRATVGPLPGVTQDIAGFKIAHRPSIYVLDSPGVLVPSIPDIETGLKLALSG-----SVKDSV 228

  Fly   420 PAVNLLCERIPRHV----------LEDKYGIVIAKPLEGEDMERPPHSEELLLAYGYN----RGF 470
            ...    |||.::.          |..||.:        |.:...||: :.:....||    |..
plant   229 VGE----ERIAQYFLAILNIRGTPLHWKYLV--------EGINEGPHA-DCIDKPSYNLKDLRHQ 280

  Fly   471 MTSNGQPDQARSARYVLKDYVNGRLLYAMSPPSVPQTEYHTFPERQRRVIEESQLP---GQQ--- 529
            .|.  |||.  ||.:.:.|.::          .|.::.|.|..|......:|:.|.   .||   
plant   281 RTK--QPDS--SALHYVGDMIS----------EVQRSLYITLSEFDGDTEDENDLECLIEQQFEV 331

  Fly   530 -QRAMRINKSTSK 541
             |:|::|....|:
plant   332 LQKALKIPHKASE 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns3NP_569915.1 HSR1_MMR1 164..395 CDD:206750 52/232 (22%)
RbgA 176..495 CDD:440775 77/347 (22%)
AT2G41670NP_850353.1 YlqF 28..205 CDD:206749 52/230 (23%)

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