DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ns3 and Ns2

DIOPT Version :9

Sequence 1:NP_001284779.1 Gene:Ns3 / 31097 FlyBaseID:FBgn0266284 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_611232.1 Gene:Ns2 / 36989 FlyBaseID:FBgn0034243 Length:674 Species:Drosophila melanogaster


Alignment Length:598 Identity:130/598 - (21%)
Similarity:239/598 - (39%) Gaps:149/598 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 NDTMLHTTELQDGYDWGRLNLSSVTEESSFQAFLRTAELAGTEFQAEKLNITFVNPK---QRVGL 92
            |..::..|.||...|    .:....:: .:|..::.::|.          :|.:|..   :||.|
  Fly    90 NSRVISQTALQKFQD----EIGKAVKD-PYQVIMKPSQLP----------VTLLNEAAKYKRVHL 139

  Fly    93 L-SKTQEQRMHQKHDEHRDQLKIPRRPKWTKETSAEELVRAENEAF--LDWRRDLALLQED--EE 152
            | :::.:.....|....|..||:         ...|:|.:|.::..  .|..:||.|::||  |:
  Fly   140 LDTESFDSTFGPKKQRKRVSLKV---------RDLEDLSKAADDQADKYDSAKDLDLIREDTGEK 195

  Fly   153 ILMTPY----EKNLEFWRQLWRVVERSDVVVQIVDARNPLLFRSADLERYVKEVEPSKMNMILVN 213
            ..:..:    .::...|.:|.:||:.|||::|::|||:|:..||..:|.::::.:|.|....::|
  Fly   196 KAVRDWVFGAGQSKRIWNELHKVVDASDVLLQVLDARDPMGTRSKYIEEFLRKEKPHKHLFFILN 260

  Fly   214 KSDLLTEEQRRHWAEYFDSEGIRTAFYSATLVEEELKREAEECLDSFPEVQQLRRAVEEIKQSLD 278
            |.||:.....:.|.....:|....||:::.                                   
  Fly   261 KVDLVPVWVTQRWVAILSAEYPTIAFHASL----------------------------------- 290

  Fly   279 SVEDALNVIEQKYKTIPETQNDELPRLPGDKNSPRLLSRLELIEFLRNIYTGPRHTE-QHVTVGM 342
                                     :.|..|.:        ||...|.:  |..|.: :.::||.
  Fly   291 -------------------------QHPFGKGA--------LINLFRQL--GKLHLDKKQISVGF 320

  Fly   343 VGYPNVGKSSTINSLMTVKKVSVSATPGKTKRFQTLFLDKDILLCDCPGLVMPSFVLTKADMLLN 407
            :|||||||||.||:|.:.|...|:...|:||.:|.:.|.|.|.|.||||:|.|: ..|..:.:|.
  Fly   321 IGYPNVGKSSVINALRSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPGVVYPT-AETDTEKVLK 384

  Fly   408 GILPIDQMRDHVPAVNLLCERIPRHVLEDKYGIVIAKPLEGEDMERPPHSEELLLAYGYNRGFMT 472
            |::.::.:.:....|:.|.:|:....:...|.|        |......|..|.|   ....|.:.
  Fly   385 GVVRVELVTNPEDYVDSLLKRVRPEYISKNYKI--------EHWNTSTHFLEQL---AQKTGKLL 438

  Fly   473 SNGQPDQARSARYVLKDYVNGRLLYAMSPP--SVPQTEYHTFPERQRRVIEESQLPGQQQRAMRI 535
            ..|:||...:||.||.|:..|:|.:.:.|.  :||:::.   .:.:..|.|:.....:.:....:
  Fly   439 KGGEPDVTVTARMVLNDWQRGKLPFYVPPEGFAVPKSQE---GKEEEVVAEDPNEDAKSEAPTFV 500

  Fly   536 NKSTSKELDNQFFSDKPTHAHVKGRTNFPNVRLANDGSLVAGNDPAAKPWRHV--------KKER 592
            ::|..|..:.:...|            |..:|:.     :.......|...|:        |.||
  Fly   501 SESVKKAREFKQIQD------------FRKIRVG-----LEYEQEDVKDLDHIDLELLEQQKAER 548

  Fly   593 REKLRKKFSHLDE 605
            ..|.:.:..:|.|
  Fly   549 AAKKKARIHNLGE 561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns3NP_001284779.1 RbgA 161..524 CDD:224083 90/365 (25%)
HSR1_MMR1 164..395 CDD:206750 61/231 (26%)
p10 <270..312 CDD:177631 2/41 (5%)
P-loop_NTPase 313..>357 CDD:304359 18/44 (41%)
Ns2NP_611232.1 NGP1NT 50..179 CDD:285379 20/112 (18%)
RbgA 206..485 CDD:224083 88/363 (24%)
NGP_1 214..370 CDD:206751 58/225 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45435330
Domainoid 1 1.000 42 1.000 Domainoid score I753
eggNOG 1 0.900 - - E1_COG1161
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.740

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