DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ns3 and gnl3

DIOPT Version :9

Sequence 1:NP_001284779.1 Gene:Ns3 / 31097 FlyBaseID:FBgn0266284 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_001002297.1 Gene:gnl3 / 321897 ZFINID:ZDB-GENE-030131-616 Length:561 Species:Danio rerio


Alignment Length:570 Identity:129/570 - (22%)
Similarity:214/570 - (37%) Gaps:148/570 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 RFGHTQRRKVDNDTMLHTTELQDG-----------YDWGRLNLSSVTEESSFQAFLRTAELAGTE 73
            |....:|.|:......|..:|:..           .|.|..|.:...||     .||.||     
Zfish    12 RLSCAKRYKIQKKVREHNRKLKKAAKKQGISRKAKKDIGVPNSAPFKEE-----VLREAE----- 66

  Fly    74 FQAEKLNITFVNPKQRVGLLSKTQEQRMHQKHDEHRDQLKIPRRPK------WTKETSAEELVRA 132
                          ||...|...:||....|..|     |..:|.|      ..||.:|::..:|
Zfish    67 --------------QRKQELETLKEQNKIVKQQE-----KAAKRKKEKDAASSVKEPAAKKAKKA 112

  Fly   133 ENEAFLDWRRDLALLQEDEEILMTPYEKNLEFWRQLWRVVERSDVVVQIVDARNPLLFRSADLER 197
                        |.::|....::..........::|.:|:|.|||:|:::|||:||..|...||.
Zfish   113 ------------AKIKEARAAIVKVKSAKTFKCQELNKVIEASDVIVEVLDARDPLGCRCPQLEE 165

  Fly   198 YVKEVEPSKMNMILVNKSDLLTEEQRRHWAEYFDSEGIRTAFYSATLVEEELKREAEECLDSFPE 262
            .|.:.|..|..:.::||.||:.::....|..:.::|.....|.|:..:::.             .
Zfish   166 MVLKHEGKKKLLFILNKIDLVPKDNLEKWLHFLEAECPTFLFKSSMQLKDR-------------T 217

  Fly   263 VQQLRRAVEEIKQSLDSVED---ALNVIEQKYKTIPETQNDELPRLPGDKNSPRLLSRLELIEFL 324
            |||.|:     ::..::|.|   |.:...:.:  :.:|.||                       |
Zfish   218 VQQKRQ-----QRGTNAVLDHSRAASCFGKDF--LLQTLND-----------------------L 252

  Fly   325 RNIYTGPRHTEQHVTVGMVGYPNVGKSSTINSLMTVKKVSVSATPGKTKRFQTLFLDKDILLCDC 389
            .|...|    |..:.||:||:|||||||.||||..::..:.....|.|:..|.:.:.|.:.:.|.
Zfish   253 ANKKEG----ETMLKVGVVGFPNVGKSSIINSLKEMRACNAGVQRGLTRCMQEVHITKKVKMIDS 313

  Fly   390 PGLVMPSFVLTKADMLLNGILPIDQMRDHVPAV-NLLCERIPRHVLEDKYGIVIAKPLEGEDMER 453
            || ::.:.....:.|.|..:...::......|| |||.:...:||:. :|.:             
Zfish   314 PG-ILAALSNPGSAMALRSLQVEEKEESPQEAVRNLLKQCNQQHVML-QYNV------------- 363

  Fly   454 PPH--SEELLLAYGYNRGFMTSNGQPDQARSARYVLKDYVNGRLLYAMSPPSVPQTEYHTFPERQ 516
            |.:  |.|.|..:....|.:...|..|...:|...|.|:...:|.|           |...||||
Zfish   364 PDYRSSLEFLTTFAMKHGLLQKGGVADTELAATTFLNDWTGAKLSY-----------YSRVPERQ 417

  Fly   517 RRVIEESQLPGQQQRAMRINKSTSKELDNQFFSDKPTHAHVKGRTNFPNV 566
                   .||.....|:.....:..::|    :.|..:.:||....|||:
Zfish   418 -------GLPSYLSDAIVTELQSDVDMD----AVKKGNENVKRSVRFPNL 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns3NP_001284779.1 RbgA 161..524 CDD:224083 89/368 (24%)
HSR1_MMR1 164..395 CDD:206750 62/233 (27%)
p10 <270..312 CDD:177631 6/44 (14%)
P-loop_NTPase 313..>357 CDD:304359 17/43 (40%)
gnl3NP_001002297.1 GN3L_Grn1 17..85 CDD:285863 19/91 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..58 5/29 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 76..110 10/38 (26%)
GTPase_YlqF 128..411 CDD:274669 84/355 (24%)
Nucleostemin_like 144..316 CDD:206753 58/219 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 486..532
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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