DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ns3 and Gnl3

DIOPT Version :9

Sequence 1:NP_001284779.1 Gene:Ns3 / 31097 FlyBaseID:FBgn0266284 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_705775.2 Gene:Gnl3 / 30877 MGIID:1353651 Length:538 Species:Mus musculus


Alignment Length:513 Identity:114/513 - (22%)
Similarity:191/513 - (37%) Gaps:163/513 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RQLIKD--RFGHTQRRKVDNDTMLHTTELQDGYDWGRLNLSSVTEESSFQAFLRTAELAGTEFQA 76
            |:|.|:  :.||.:.||                |.|..|.:...|     |.||.|||  .:.|.
Mouse    30 RKLRKEAKKRGHKKPRK----------------DPGVPNSAPFKE-----ALLREAEL--RKQQL 71

  Fly    77 EKLNITFVNPKQRVGLLSKTQEQRMHQKHDEHRDQLKIPRRPKWTKETSAEELVRAENEAFLDWR 141
            |:|               |.|::...||..|.:.:|::         :..:|....|..      
Mouse    72 EEL---------------KQQQKLDRQKEQERKRKLEV---------SPGDEQSNVETR------ 106

  Fly   142 RDLALLQEDEEILMTPYEKNLEFWRQ---------LWRVVERSDVVVQIVDARNPLLFRSADLER 197
                  :|.:|    |..|..:..:|         |.:|:|.||:|::::|||:||..|...:|.
Mouse   107 ------EESDE----PKRKKAKAGKQNPKKLHCQELKKVIEASDIVLEVLDARDPLGCRCPQIEE 161

  Fly   198 YVKEVEPSKMNMILVNKSDLLTEEQRRHWAEYFDSEGIRTAFYSATLVEEELKREAEECLDSFPE 262
            .|.: ..||..::::|||||:.:|...:|..|.:.|.....|.::|    .||            
Mouse   162 AVIQ-SGSKKLILVLNKSDLVPKENLENWLNYLNKELPTVVFKAST----NLK------------ 209

  Fly   263 VQQLRRAVEEIKQSLDSVEDALNVIEQKYKTIPETQ-----NDELPRLPGDKNSPRLLSRLELIE 322
                .|...:||               |.|.:|...     .:.|.:|.||..            
Mouse   210 ----NRKTFKIK---------------KKKVVPFQSKICCGKEALWKLLGDFQ------------ 243

  Fly   323 FLRNIYTGPRHTEQHVTVGMVGYPNVGKSSTINSLMTVKKVSVSATPGKTKRFQTLFLDKDILLC 387
                     :...:.:.||::|:|||||||.||||......:|..:.|.|:..|.:.|||.|.:.
Mouse   244 ---------QSCGKDIQVGVIGFPNVGKSSVINSLKQEWICNVGISMGLTRSMQIVPLDKQITII 299

  Fly   388 DCPGLVM-----PSFVLTKADMLLNGILPIDQMRDHVPAVNLLCERIPRHVLEDKYGIVIAKPLE 447
            |.|.|::     |:.:..::...:..:.|::       |.:.:..:.....:..||.:       
Mouse   300 DSPCLIISPCNSPTALALRSPASIEELRPLE-------AASAILSQADNEQVVLKYTV------- 350

  Fly   448 GEDMERPPHSEEL--LLAYGYNRGFMTSNGQPDQARSARYVLKDYVNGRLLYAMSPPS 503
                  |.:.:.|  .......||.....|.|:...:|:.|..::....|.|...||:
Mouse   351 ------PEYKDSLHFFTKLAQRRGLHQKGGSPNVESAAKLVWSEWTGASLGYYCHPPA 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns3NP_001284779.1 RbgA 161..524 CDD:224083 82/364 (23%)
HSR1_MMR1 164..395 CDD:206750 65/249 (26%)
p10 <270..312 CDD:177631 9/46 (20%)
P-loop_NTPase 313..>357 CDD:304359 12/43 (28%)
Gnl3NP_705775.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..57 10/42 (24%)
Basic. /evidence=ECO:0000250 2..46 5/15 (33%)
GN3L_Grn1 16..93 CDD:285863 25/100 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 69..126 16/96 (17%)
GTPase_YlqF 130..395 CDD:274669 77/341 (23%)
Nucleostemin_like 140..302 CDD:206753 58/218 (27%)
Intermediate. /evidence=ECO:0000250 277..451 28/146 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 460..538
Acidic. /evidence=ECO:0000250 460..532
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.