DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrpprc2 and AT1G06710

DIOPT Version :9

Sequence 1:NP_569913.1 Gene:Lrpprc2 / 31095 FlyBaseID:FBgn0027794 Length:1072 Species:Drosophila melanogaster
Sequence 2:NP_001321172.1 Gene:AT1G06710 / 837181 AraportID:AT1G06710 Length:997 Species:Arabidopsis thaliana


Alignment Length:1056 Identity:182/1056 - (17%)
Similarity:327/1056 - (30%) Gaps:379/1056 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 SQERLQLFKG---LWAQLIKLGQPTLAHYHTKLQVLRQNRLPLTDYRSLLAEIAVYHGAADSTLY 201
            |:|.:.|.|.   |...|:..|.   .:.|..:.::.|:.:   |.|::          ||:.  
plant    62 SREVVDLTKEYSFLHDSLVDYGN---VNVHQVVPIITQSSI---DARAI----------ADAV-- 108

  Fly   202 GALLDVAGAAGNMRMATEILSEMRERSLALTEHNFHALLLGHARSGDLPGAESVLASMRAAGIQQ 266
            ..:.||.|     |.:.:.|.:.||:   |:|    :|::...|....|.|  |::....||.|.
plant   109 SGVDDVFG-----RKSQKFLRQFREK---LSE----SLVIEVLRLIARPSA--VISFFVWAGRQI 159

  Fly   267 GSSTQAIWFEALLENGQLAQAKELLQVEHGFTAP-QLLQMLRGLLASKDVDTDLIQLLVKELPRE 330
            |....|..:.||:         :|:..:.....| :.||.:|        |.|      ||:..|
plant   160 GYKHTAPVYNALV---------DLIVRDDDEKVPEEFLQQIR--------DDD------KEVFGE 201

  Fly   331 FLTGIDLPPAIRSLCIQLVHQGRTEVVIQLVGALPAPKFELQNQNVDEYGALLLQEFFRAQVPLD 395
            ||..:     :|..|    ..|...:.::.:|.|...:|.......:    .|:|.|.:|     
plant   202 FLNVL-----VRKHC----RNGSFSIALEELGRLKDFRFRPSRSTYN----CLIQAFLKA----- 248

  Fly   396 QTIQFAGQLVQRNQNVRALHLVAELALRRQPSSALRCLE-DLSAAGEELRPHYFWPLILHHYRRE 459
                      .|..:...:|....||..|.....|||.. .|...|:       |          
plant   249 ----------DRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGK-------W---------- 286

  Fly   460 GESGMLRLVSEMRRLRVECDEETLRHYLFPHLRQTLVQPLEAVKALESAGVKPSQTL-CPVVSHL 523
                                                   .||:..:|:....|.... ..::|.|
plant   287 ---------------------------------------REALTLVETENFVPDTVFYTKLISGL 312

  Fly   524 LQQHQMSEVLDLLDR------YPTRLDLATLLQPLSSLAVNARATKRFEVFAKVIQALQQKALKR 582
            .:.....|.:|.|:|      .|..:..:|||                      ...|.:|.|.|
plant   313 CEASLFEEAMDFLNRMRATSCLPNVVTYSTLL----------------------CGCLNKKQLGR 355

  Fly   583 GEDFVGSLLLQMTGPQTRLRQDATSLRRFLHELRRLELQISPAASEALLSVVRHA---TDDVDLI 644
            .:..:..::::...|                         ||....:|:    ||   :.|....
plant   356 CKRVLNMMMMEGCYP-------------------------SPKIFNSLV----HAYCTSGDHSYA 391

  Fly   645 QDLAKTLQKMKNPQLALPADTV------SLHGGFIKHPRDMSIDELECHLVELESK---QLNPRG 700
            ..|.|.:.|..:    :|...|      |:.|         ..|.|.|.|::|..|   ::...|
plant   392 YKLLKKMVKCGH----MPGYVVYNILIGSICG---------DKDSLNCDLLDLAEKAYSEMLAAG 443

  Fly   701 VLRRLLQLS------VRSGRLERAQQLLAK--------------------CQVLKVQ-------- 731
            |:...:.:|      ..:|:.|:|..::.:                    |...|::        
plant   444 VVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEE 508

  Fly   732 -ESAGMMASIF-----------------------------------------DLHIKLRDLPRAQ 754
             :..|::|.::                                         ..::|.:.:..|.
plant   509 MKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYAN 573

  Fly   755 ESLERLSS--MYPAFQIDEHKVIDYAALL---VQGQQLEAAKQLLQRRAEQHKVVGGDYVMK--- 811
            |..|.:.|  ..|       .::.|:||:   .:..|:|.|.|:.:|......|...|...|   
plant   574 ELFETMLSEGCLP-------NIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYD 631

  Fly   812 ------NVWQLLTNVGQLAASSHAGGESSKQLNQTREWLDFLRGLGYCQSQNALLGPVVREWLLK 870
                  ||    ...|.|.    .|...|.::.:.|:.||.:...| |:....:...::......
plant   632 DNSERPNV----VTYGALL----DGFCKSHRVEEARKLLDAMSMEG-CEPNQIVYDALIDGLCKV 687

  Fly   871 GNLDAAVAEFQRLANTHKHTPLQFELLSLLVRLGNGDEQELTR--FPGVTAESAQQHLAVVTATV 933
            |.||.| .|.:...:.|......:...||:.|......|:|..  ...:...|...::.:.|..:
plant   688 GKLDEA-QEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMI 751

  Fly   934 SRIHGAANMNSA--LLLALAESGKETQLRRLIINPEFRINHELLVKNCEHLGQEGAVRTLLRLAR 996
            ..:......:.|  |:..:.|.|.:..:          :.:..::   :..|..|.:.|.|.|..
plant   752 DGLCKVGKTDEAYKLMQMMEEKGCQPNV----------VTYTAMI---DGFGMIGKIETCLELLE 803

  Fly   997 --GVRGVQRTIDEQKIYDLLLAQFCRSNDYEAALDLFERLEADDELKVSH--------------- 1044
              |.:||   ......|.:|:...|::...:.|.:|.|      |:|.:|               
plant   804 RMGSKGV---APNYVTYRVLIDHCCKNGALDVAHNLLE------EMKQTHWPTHTAGYRKVIEGF 859

  Fly  1045 --EFLRNLVQLLQVNQ 1058
              ||:.:|..|.::.|
plant   860 NKEFIESLGLLDEIGQ 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrpprc2NP_569913.1 PLN03218 <197..>292 CDD:215636 23/94 (24%)
PPR repeat 201..227 CDD:276811 6/25 (24%)
PPR repeat 233..262 CDD:276811 6/28 (21%)
PPR repeat 268..292 CDD:276811 4/23 (17%)
AT1G06710NP_001321172.1 PPR repeat 167..194 CDD:276811 7/43 (16%)
PLN03218 <204..>608 CDD:215636 80/558 (14%)
PPR repeat 204..229 CDD:276811 5/33 (15%)
PPR repeat 235..261 CDD:276811 6/44 (14%)
PPR repeat 304..331 CDD:276811 6/26 (23%)
PPR repeat 337..366 CDD:276811 7/50 (14%)
PPR repeat 372..400 CDD:276811 7/31 (23%)
PPR repeat 485..512 CDD:276811 2/26 (8%)
PLN03218 <520..>911 CDD:215636 67/395 (17%)
PPR repeat 520..547 CDD:276811 0/26 (0%)
PPR repeat 553..582 CDD:276811 4/28 (14%)
PPR repeat 588..614 CDD:276811 7/25 (28%)
PPR repeat 639..665 CDD:276811 8/33 (24%)
PPR repeat 674..702 CDD:276811 5/28 (18%)
PPR repeat 711..738 CDD:276811 5/26 (19%)
PPR repeat 746..773 CDD:276811 3/26 (12%)
PPR repeat 779..808 CDD:276811 6/41 (15%)
PPR repeat 814..842 CDD:276811 7/33 (21%)
PPR repeat 884..909 CDD:276811
PPR repeat 915..948 CDD:276811
PPR_2 921..966 CDD:404055
PPR repeat 954..978 CDD:276811
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 109 1.000 Inparanoid score I2075
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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