DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrpprc2 and AT5G59900

DIOPT Version :9

Sequence 1:NP_569913.1 Gene:Lrpprc2 / 31095 FlyBaseID:FBgn0027794 Length:1072 Species:Drosophila melanogaster
Sequence 2:NP_200798.1 Gene:AT5G59900 / 836112 AraportID:AT5G59900 Length:907 Species:Arabidopsis thaliana


Alignment Length:662 Identity:121/662 - (18%)
Similarity:215/662 - (32%) Gaps:219/662 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 VGIEEVHFLL-----------GSCVPELLPAQSSQERLQLFKGLWAQLIKLG-QPTLAHYHTKLQ 170
            :|:|.:..:|           .|.|..|......:|.|.|.|    :::..| .|.|..|:..:.
plant   315 IGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVK----RVVDFGVSPNLFVYNALID 375

  Fly   171 VLRQNRLPLTDYRSLLAEIAVYHGA-------------ADSTLYGALLDVAGAAGNMRMATEILS 222
            .|.:.|              .:|.|             .:...|..|:|:....|.:..|...|.
plant   376 SLCKGR--------------KFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLG 426

  Fly   223 EMRERSLALTEHNFHALLLGHARSGDLPGAESVLASMRAAGIQQGSSTQAIWFEALLENGQLAQA 287
            ||.:..|.|:.:.:::|:.||.:.||:..||..:|.|    |.:......:.:.:|: .|..::.
plant   427 EMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM----INKKLEPTVVTYTSLM-GGYCSKG 486

  Fly   288 K--ELLQVEHGFTAPQLLQMLRGLLASKDVDTDLIQLLVKELPREFLTGIDLPPAIRSLCIQLVH 350
            |  :.|::.|..|.       :|:..|....|.|:..|       |..|:     ||. .::|.:
plant   487 KINKALRLYHEMTG-------KGIAPSIYTFTTLLSGL-------FRAGL-----IRD-AVKLFN 531

  Fly   351 QGRTEVVIQLVGALPAPKFELQNQNVD----EYGALLLQEFFRAQVPLDQTIQFAGQLVQRN--- 408
                               |:...||.    .|..::  |.:..:..:.:..:|..::.::.   
plant   532 -------------------EMAEWNVKPNRVTYNVMI--EGYCEEGDMSKAFEFLKEMTEKGIVP 575

  Fly   409 QNVRALHLVAELALRRQPSSALRCLEDLSAAGEELRPHYFWPLILHHYRREGE-SGMLRLVSEMR 472
            .......|:..|.|..|.|.|...::.|.....||....:..| ||.:.|||: ...|.:..||.
plant   576 DTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGL-LHGFCREGKLEEALSVCQEMV 639

  Fly   473 RLRVECD--------EETLRH---YLFPHLRQTLVQPLEAVKALESAGVKPSQTL-CPVVSHLLQ 525
            :..|:.|        :.:|:|   .||..|          :|.:...|:||...: ..::....:
plant   640 QRGVDLDLVCYGVLIDGSLKHKDRKLFFGL----------LKEMHDRGLKPDDVIYTSMIDAKSK 694

  Fly   526 QHQMSEVLDLLDRYPTRLDLATLLQPLSSLAVNARATKRFEVFAKVIQALQQKALKRGEDFVGSL 590
            .....|...:.|                 |.:|.........:..||..|    .|.|       
plant   695 TGDFKEAFGIWD-----------------LMINEGCVPNEVTYTAVINGL----CKAG------- 731

  Fly   591 LLQMTGPQTRLRQDATSLRRFLHELRRLELQISPAASEALLSVVRHATDD--VDLIQDLAKTLQK 653
                                |::|...|..::.|.:     ||....|..  :|::......:||
plant   732 --------------------FVNEAEVLCSKMQPVS-----SVPNQVTYGCFLDILTKGEVDMQK 771

  Fly   654 MKNPQLALPADTVSLHGGFIKHPRDMSIDELECHLVELESKQLNPRGVL------RRLLQLSVRS 712
                       .|.||...:|                         |:|      ..|::...|.
plant   772 -----------AVELHNAILK-------------------------GLLANTATYNMLIRGFCRQ 800

  Fly   713 GRLERAQQLLAK 724
            ||:|.|.:|:.:
plant   801 GRIEEASELITR 812

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrpprc2NP_569913.1 PLN03218 <197..>292 CDD:215636 23/96 (24%)
PPR repeat 201..227 CDD:276811 8/25 (32%)
PPR repeat 233..262 CDD:276811 9/28 (32%)
PPR repeat 268..292 CDD:276811 3/25 (12%)
AT5G59900NP_200798.1 PPR repeat 106..133 CDD:276811
PPR repeat 159..185 CDD:276811
PPR_2 190..238 CDD:404055
PPR repeat 194..221 CDD:276811
PLN03218 <220..>589 CDD:215636 62/337 (18%)
PPR repeat 227..256 CDD:276811
PPR repeat 262..288 CDD:276811
PPR repeat 299..326 CDD:276811 3/10 (30%)
PPR repeat 336..361 CDD:276811 7/28 (25%)
PPR repeat 369..396 CDD:276811 5/40 (13%)
PPR repeat 404..431 CDD:276811 8/26 (31%)
PLN03218 <440..>835 CDD:215636 93/519 (18%)
PPR repeat 440..466 CDD:276811 10/29 (34%)
PPR repeat 474..501 CDD:276811 6/34 (18%)
PPR repeat 507..536 CDD:276811 9/60 (15%)
PPR repeat 542..571 CDD:276811 3/30 (10%)
PPR repeat 577..601 CDD:276811 6/23 (26%)
PPR repeat 612..641 CDD:276811 9/29 (31%)
PPR repeat 649..676 CDD:276811 6/36 (17%)
PPR repeat 682..711 CDD:276811 3/45 (7%)
PPR repeat 717..744 CDD:276811 8/57 (14%)
PPR repeat 789..816 CDD:276811 7/24 (29%)
PPR_2 820..868 CDD:404055
PPR repeat 822..851 CDD:276811
PPR_2 855..>894 CDD:404055
PPR repeat 857..885 CDD:276811
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 109 1.000 Inparanoid score I2075
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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