DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrpprc2 and PGR3

DIOPT Version :9

Sequence 1:NP_569913.1 Gene:Lrpprc2 / 31095 FlyBaseID:FBgn0027794 Length:1072 Species:Drosophila melanogaster
Sequence 2:NP_194913.1 Gene:PGR3 / 829314 AraportID:AT4G31850 Length:1112 Species:Arabidopsis thaliana


Alignment Length:1081 Identity:191/1081 - (17%)
Similarity:364/1081 - (33%) Gaps:345/1081 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 SLLQMRSLGTGGVLSAVERRSRRPASSSE---KPKASVADAWTQLEAYYRQHDLINFEH----CQ 103
            |::.|:|....|  |.:.:.|:...||||   :...|..|..:....:......:|..|    |.
plant    60 SVVSMKSSDFSG--SMIRKSSKPDLSSSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLVHTTETCN 122

  Fly   104 RLLELLQESASPLGVGIEEVHFLLGSCVPELLPAQSSQERLQLFKGLWAQLIKLGQPTLAHYHTK 168
            .:||.|:....     :||:.::. ..:.:.:..:.:...|.:||.|   .:|.|   |......
plant   123 YMLEALRVDGK-----LEEMAYVF-DLMQKRIIKRDTNTYLTIFKSL---SVKGG---LKQAPYA 175

  Fly   169 LQVLRQNRLPLTDYRSLLAEIAVYHGAADSTLYGALLDVAGAAGNMRMATEILSEMRERSL---A 230
            |:.:|:....|..|.        |:|     |...||       ..|..||.:...|...|   .
plant   176 LRKMREFGFVLNAYS--------YNG-----LIHLLL-------KSRFCTEAMEVYRRMILEGFR 220

  Fly   231 LTEHNFHALLLGHARSGDLPGAESVLASMRAAGIQQGSSTQAIWFEALLENGQLAQAKELL-QVE 294
            .:...:.:|::|..:..|:.....:|..|...|::....|..|....|...|::.:|.|:| :::
plant   221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMD 285

  Fly   295 HGFTAPQLLQ---MLRGLLASKDVDTDLIQLLVKELPREFLTGIDLPPAIRSLCIQLVHQGRTEV 356
            .....|.::.   ::..|..::.:|      ..||:..:..||...|..:..:.:          
plant   286 DEGCGPDVVTYTVLIDALCTARKLD------CAKEVFEKMKTGRHKPDRVTYITL---------- 334

  Fly   357 VIQLVGALPAPKFELQNQNVDEYGALLLQEFFR-----AQVP-------LDQTIQFAGQL----- 404
                     ..:|. .|:::|.     :::|:.     ..||       |...:..||..     
plant   335 ---------LDRFS-DNRDLDS-----VKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384

  Fly   405 ---VQRNQNVRA-LH----LVAELALRRQPSSALRCLEDLSAAGEELRP-HYFWPLILHHYRREG 460
               |.|:|.:.. ||    |:..|....:...||....::.:.|  ::| .|.:.:.:.:|.:.|
plant   385 TLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLG--VKPTAYTYIVFIDYYGKSG 447

  Fly   461 ESGMLRLVSEMRRLRVECDEETLRHYLFPHLRQTLVQPLEAVKALESAGVKPSQTLCPVVSHLLQ 525
            :|                                 |..||..:.:::.|:.|:...|..      
plant   448 DS---------------------------------VSALETFEKMKTKGIAPNIVACNA------ 473

  Fly   526 QHQMSEVLDLLDRYPTRLDLATLLQPLSSLAVNARATKRFEVF------AKVIQALQQKALKRGE 584
                                     .|.|||...|..:..::|      ..|..::....:.:..
plant   474 -------------------------SLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY 513

  Fly   585 DFVGSLLLQMTGPQTRLRQDATSLRRFLHELRRLELQISPAASEALLSVVRHATDDVDLIQDLAK 649
            ..||.:            .:|..|   |.|:  :|....|               ||.::..|..
plant   514 SKVGEI------------DEAIKL---LSEM--MENGCEP---------------DVIVVNSLIN 546

  Fly   650 TLQKMKNPQLALPADTVSLHGGFIKHPRDMSIDELECHLVELESKQLNPRGVLRRLLQLSV-RSG 713
            ||.|         ||.|               ||.....:.::..:|.|..|....|...: ::|
plant   547 TLYK---------ADRV---------------DEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNG 587

  Fly   714 RLERAQQLLAKCQVLKVQESAGMMA-----------SIFDLHIKLRDLPRAQESLERLSSMYPAF 767
            :::.|.:|.           .||:.           ::||...|..::..|.:.|.::..|....
plant   588 KIQEAIELF-----------EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVP 641

  Fly   768 QIDEHKVIDYAALLVQGQQLEAAKQLLQRRAEQHKVVGGDYV--------------MKNVWQLLT 818
            .:..:..|.: .|:..||..||.....|.:    |:|..|:|              :::.::::|
plant   642 DVFTYNTIIF-GLVKNGQVKEAMCFFHQMK----KLVYPDFVTLCTLLPGVVKASLIEDAYKIIT 701

  Fly   819 N-----------------VGQLAASSHAGGESSKQLNQTREWLDFLRGLGYCQSQNALLGPVVRE 866
            |                 :|.:.|  .||.:::...::.      |...|.|:..:::|.|::|.
plant   702 NFLYNCADQPANLFWEDLIGSILA--EAGIDNAVSFSER------LVANGICRDGDSILVPIIRY 758

  Fly   867 WLLKGNLDAAVAEFQRLANTHKHTPLQFELLSLLVRLGNGDEQELTRFPGVTAESAQQHLAVVTA 931
            .....|:..|...|::..   |...:|.:|.:..:.:|...|.::       .|.||.....|.:
plant   759 SCKHNNVSGARTLFEKFT---KDLGVQPKLPTYNLLIGGLLEADM-------IEIAQDVFLQVKS 813

  Fly   932 TVSRIHGAANMNSALLLALAESGKETQLRRLIINPEFRINHELLVKNCEHLGQEGAVRTLLRLAR 996
            | ..|...|..| .||.|..:|||..:|        |.:..|:....||                
plant   814 T-GCIPDVATYN-FLLDAYGKSGKIDEL--------FELYKEMSTHECE---------------- 852

  Fly   997 GVRGVQRTIDEQKIYDLLLAQFCRSNDYEAALDLFERLEAD 1037
                 ..||    .::::::...::.:.:.||||:..|.:|
plant   853 -----ANTI----THNIVISGLVKAGNVDDALDLYYDLMSD 884

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrpprc2NP_569913.1 PLN03218 <197..>292 CDD:215636 21/98 (21%)
PPR repeat 201..227 CDD:276811 6/25 (24%)
PPR repeat 233..262 CDD:276811 5/28 (18%)
PPR repeat 268..292 CDD:276811 7/24 (29%)
PGR3NP_194913.1 PPR repeat 120..147 CDD:276811 6/32 (19%)
PPR repeat 155..182 CDD:276811 9/32 (28%)
PPR_2 187..235 CDD:289786 13/67 (19%)
PPR 189..222 CDD:273253 11/52 (21%)
PPR repeat 190..217 CDD:276811 9/46 (20%)
PPR_2 221..270 CDD:289786 9/48 (19%)
PPR 225..258 CDD:273253 6/32 (19%)
PPR repeat 225..252 CDD:276811 5/26 (19%)
PPR_2 256..304 CDD:289786 8/47 (17%)
PPR repeat 258..287 CDD:276811 7/28 (25%)
PPR 259..293 CDD:273253 8/33 (24%)
PPR_1 287..320 CDD:289614 5/38 (13%)
PPR repeat 293..320 CDD:276811 4/32 (13%)
PPR_2 326..375 CDD:289786 8/73 (11%)
PPR 329..363 CDD:273253 6/58 (10%)
PPR repeat 330..357 CDD:276811 4/51 (8%)
PPR_1 357..390 CDD:289614 6/32 (19%)
PPR_2 361..408 CDD:289786 10/46 (22%)
PPR repeat 365..392 CDD:276811 5/26 (19%)
PPR_1 392..425 CDD:289614 7/32 (22%)
PPR_2 396..445 CDD:289786 10/50 (20%)
PPR repeat 398..427 CDD:276811 6/28 (21%)
PPR repeat 433..462 CDD:276811 7/61 (11%)
PPR 434..468 CDD:273253 9/66 (14%)
PPR_2 466..515 CDD:289786 9/79 (11%)
PPR repeat 470..497 CDD:276811 7/57 (12%)
PPR_2 501..550 CDD:289786 13/80 (16%)
PPR 504..538 CDD:273253 8/65 (12%)
PPR repeat 505..532 CDD:276811 6/43 (14%)
PPR_1 532..565 CDD:289614 12/71 (17%)
PPR repeat 538..567 CDD:276811 10/52 (19%)
PPR_1 569..600 CDD:289614 8/41 (20%)
PPR_2 571..620 CDD:289786 10/59 (17%)
PPR repeat 575..602 CDD:276811 6/37 (16%)
PPR_2 606..655 CDD:289786 8/49 (16%)
PPR repeat 608..637 CDD:276811 5/28 (18%)
PPR 609..643 CDD:273253 6/33 (18%)
PPR_1 637..670 CDD:289614 8/33 (24%)
PPR_2 641..689 CDD:289786 11/52 (21%)
PPR repeat 643..671 CDD:276811 7/32 (22%)
PPR repeat 755..779 CDD:276811 5/26 (19%)
PPR_2 787..832 CDD:289786 13/53 (25%)
PPR repeat 787..814 CDD:276811 6/33 (18%)
PPR_1 815..847 CDD:289614 12/40 (30%)
PPR_2 818..867 CDD:289786 15/82 (18%)
PPR repeat 822..849 CDD:276811 10/35 (29%)
PPR_1 851..877 CDD:289614 6/50 (12%)
PPR repeat 857..885 CDD:276811 6/28 (21%)
PPR_2 889..938 CDD:289786
PPR 892..926 CDD:273253
PPR repeat 893..920 CDD:276811
PPR_2 924..972 CDD:289786
PPR 928..960 CDD:273253
PPR repeat 928..955 CDD:276811
PPR_2 959..1008 CDD:289786
PPR repeat 961..990 CDD:276811
PPR 963..996 CDD:273253
PPR_1 991..1023 CDD:289614
PPR repeat 996..1025 CDD:276811
PPR_2 1030..1077 CDD:289786
PPR repeat 1032..1061 CDD:276811
PPR 1033..1067 CDD:273253
PPR_2 1065..1105 CDD:289786
PPR repeat 1067..1094 CDD:276811
PPR 1068..1102 CDD:273253
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 109 1.000 Inparanoid score I2075
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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