DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrpprc2 and AT4G19440

DIOPT Version :9

Sequence 1:NP_569913.1 Gene:Lrpprc2 / 31095 FlyBaseID:FBgn0027794 Length:1072 Species:Drosophila melanogaster
Sequence 2:NP_001190771.2 Gene:AT4G19440 / 827685 AraportID:AT4G19440 Length:838 Species:Arabidopsis thaliana


Alignment Length:579 Identity:114/579 - (19%)
Similarity:183/579 - (31%) Gaps:224/579 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 EHCQRLLELLQES-ASPLGVGIEEVHFLLGSCVPELLPAQSSQERLQLFKGLWAQLIKLG-QPTL 162
            |...:|...::|: .:|..|....|...||.|        ...:...:||   .::::.| :|||
plant   290 EEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMC--------GRYDEAFMFK---EKMVERGMEPTL 343

  Fly   163 AHYHTKLQVL-RQNRLPLTDYRSLLAEIAVYHGAADSTLYGALLDVAGAAGNMRMATEILSEMRE 226
            ..|...::.| |..|  :.|...:|.|:.......:..:|..|:|....||::..|.||...|..
plant   344 ITYSILVKGLTRAKR--IGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS 406

  Fly   227 RSLALTEHNFHALLLGHARSGDLPGAESVLASMRAAG--IQQGSSTQAI---------------- 273
            :.|:||...::.|:.|:.::|....||.:|..|.:.|  :.|||.|..|                
plant   407 KGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFV 471

  Fly   274 ----------------------------------WFE------------------ALLENGQLAQ 286
                                              ||:                  .|.|.|:|.:
plant   472 GEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDE 536

  Fly   287 A----KELL-------QVEHGFTAPQLLQMLRGLLASKDVDTDLIQL--LVKE--LPREFLTGID 336
            |    ||:|       :|.:.       .::.|....|.:|...:.|  :||.  .|..:...| 
plant   537 AFRIQKEILGRGCVMDRVSYN-------TLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI- 593

  Fly   337 LPPAIRSLCIQLVHQGRTEVVIQL------VGALPAPKFELQNQNVDEYGALL-----------L 384
                   |...|.:..:.|..||.      .|.||         :|..|..::           .
plant   594 -------LICGLFNMNKVEEAIQFWDDCKRNGMLP---------DVYTYSVMIDGCCKAERTEEG 642

  Fly   385 QEFFRAQVPLDQTIQFAGQLVQRNQNVRALHLVAELALRRQPSSALRCLEDLSAAG--------- 440
            ||||.         :...:.||.| .|...||:.......:.|.||...||:...|         
plant   643 QEFFD---------EMMSKNVQPN-TVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYT 697

  Fly   441 -------------------EELRPHYFWPLILHH------------------------------- 455
                               ||:|.....|.:.|:                               
plant   698 SLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN 762

  Fly   456 ----------YRREGE-SGMLRLVSEMRRLRVECDEETLRHYLFPHLRQTLVQPLEAVK 503
                      |.|:|. :...||::|||...:..|..|.:.:::.:|:|..|  |||.|
plant   763 KITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGV--LEAFK 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrpprc2NP_569913.1 PLN03218 <197..>292 CDD:215636 35/175 (20%)
PPR repeat 201..227 CDD:276811 9/25 (36%)
PPR repeat 233..262 CDD:276811 7/28 (25%)
PPR repeat 268..292 CDD:276811 13/102 (13%)
AT4G19440NP_001190771.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 109 1.000 Inparanoid score I2075
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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