DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Lrpprc2 and AT3G06920

DIOPT Version :9

Sequence 1:	NP_569913.1	Gene:	Lrpprc2 / 31095	FlyBaseID:	FBgn0027794	Length:	1072	Species:	Drosophila melanogaster
Sequence 2:	NP_001325964.1	Gene:	AT3G06920 / 819877	AraportID:	AT3G06920	Length:	885	Species:	Arabidopsis thaliana

Alignment Length:	705	Identity:	120/705 - (17%)
Similarity:	241/705 - (34%)	Gaps:	154/705 - (21%)

- Green bases have known domain annotations that are detailed below.

  Fly   166 HTKLQVLRQNRLPLTDYRSLLAEIAVYHGAADSTLYGALLD-----VAGAAGNMRMATEILSEMR 225
            |.|......||..:.|..::| |...:..:|::||......     |.|....::.....:...|
plant    37 HEKPYTFEGNRQTVNDICNVL-ETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIEYFR 100

  Fly   226 --ERSLALTE--HNFHALLLGHARSGDLPGAESVLASMRAAGIQQGSSTQAIWFEALLENGQLAQ 286
              ||...|..  .::::|||..||..:....:.:|..|..||.....:|........::..:|.:
plant   101 WYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLRE 165

  Fly   287 AKELLQVEHGFTAPQLLQMLRGLLASKDV--DTDLIQLLVKELPREFLTGIDLPPAIR---SLCI 346
            ..:::|:...|...........|:.:...  .:|::..|.:::..     :...|.:.   :|..
plant   166 GYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQE-----LGYEPTVHLFTTLIR 225

  Fly   347 QLVHQGRTEVVIQLVGALPAPKFE----LQNQNVDEYGAL----LLQEFF-----RAQVPLDQT- 397
            ....:||.:..:.|:..:.:...:    |.|..:|.:|.:    :..:||     ....|.:.|
plant   226 GFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTY 290

  Fly   398 IQFAGQLVQRNQNVRALHLVAELAL-RRQP------------------SSALRCLEDLSAAGEEL 443
            ....|.|.:.|:...|:.:...|.. ||.|                  ..|...||...|.| .:
plant   291 TSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKG-SI 354

  Fly   444 RPHYFWPLILHHYRREGE-SGMLRLVSEMRRLRVECDEETLRHYLFPHLR--QTLVQPL------ 499
            .....:..||...|:.|: ...|::..||::...            |:|.  ..|:..|
plant   355 PSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA------------PNLSTYNILIDMLCRAGKL 407

  Fly   500 ----EAVKALESAGVKPS-QTLCPVVSHLLQQHQMSEVLDLLDRY------PTRLDLATLLQPLS 553
                |...:::.||:.|: :|:..:|..|.:..::.|...:.:..      |..:...:|:..|.
plant   408 DTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLG 472

  Fly   554 SLAVNARATKRFEVFAKVIQA-------LQQKALKR---------GEDFVGSLLLQMTGPQTRLR 602
            .:   .|....::|:.|::.:       :....:|.         |......::.|...|..:|.
plant   473 KV---GRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLL 534

  Fly   603 Q-------------------DATSLRRFLHELRRLELQISPAASEALLSVVRHATDDVDLIQDLA 648
            .                   :....|||:.:.|.             .|::.|.........:..
plant   535 NTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARS-------------YSILIHGLIKAGFANETY 586

  Fly   649 KTLQKMKNPQLALPADTVSLH---GGFIKHPRDMSIDELECHLVELESKQLNPR-----GVLRRL 705
            :....||.....|  ||.:.:   .||.|..:.....:|   |.|:::|...|.     .|:..|
plant   587 ELFYSMKEQGCVL--DTRAYNIVIDGFCKCGKVNKAYQL---LEEMKTKGFEPTVVTYGSVIDGL 646

  Fly   706 LQLSVRSGRLERAQQLLAKCQVLKVQESAGMMASIFDLHIKLRDLPRAQESLERL 760
            .::.    ||:.|..|..:.:..:::.:..:.:|:.|...|:..:..|...||.|
plant   647 AKID----RLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEEL 697

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Lrpprc2	NP_569913.1	PLN03218	<197..>292	CDD:215636	19/103 (18%)
		PPR repeat	201..227	CDD:276811	3/32 (9%)
		PPR repeat	233..262	CDD:276811	7/30 (23%)
		PPR repeat	268..292	CDD:276811	2/23 (9%)
AT3G06920	NP_001325964.1	PPR repeat	82..105	CDD:276811	4/22 (18%)
		PPR_long	88..246	CDD:407303	25/162 (15%)
		PPR repeat	114..141	CDD:276811	7/26 (27%)
		PPR repeat	153..176	CDD:276811	2/22 (9%)
		PPR repeat	182..211	CDD:276811	3/33 (9%)
		PPR_2	184..229	CDD:404055	5/49 (10%)
		PLN03218	<216..>678	CDD:215636	81/499 (16%)
		PPR repeat	219..246	CDD:276811	4/26 (15%)
		PPR repeat	254..281	CDD:276811	6/26 (23%)
		PPR repeat	287..316	CDD:276811	6/28 (21%)
		PPR repeat	324..351	CDD:276811	3/26 (12%)
		PPR repeat	357..386	CDD:276811	7/28 (25%)
		PPR repeat	391..419	CDD:276811	4/27 (15%)
		PPR repeat	426..452	CDD:276811	4/25 (16%)
		PPR repeat	461..490	CDD:276811	5/31 (16%)
		PPR_2	495..537	CDD:404055	5/41 (12%)
		PPR repeat	496..523	CDD:276811	2/26 (8%)
		PPR repeat	535..560	CDD:276811	0/24 (0%)
		PPR repeat	568..595	CDD:276811	4/39 (10%)
		PLN03218	<592..>865	CDD:215636	26/115 (23%)
		PPR repeat	603..630	CDD:276811	6/29 (21%)
		PPR repeat	636..665	CDD:276811	6/32 (19%)
		PPR repeat	671..700	CDD:276811	7/27 (26%)
		PPR repeat	706..734	CDD:276811
		PPR repeat	741..769	CDD:276811
		PPR repeat	776..805	CDD:276811
		PPR repeat	811..840	CDD:276811
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	109	1.000	Inparanoid score	I2075
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.050