DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrpprc2 and EMB2794

DIOPT Version :9

Sequence 1:NP_569913.1 Gene:Lrpprc2 / 31095 FlyBaseID:FBgn0027794 Length:1072 Species:Drosophila melanogaster
Sequence 2:NP_001318179.1 Gene:EMB2794 / 814746 AraportID:AT2G02150 Length:761 Species:Arabidopsis thaliana


Alignment Length:634 Identity:119/634 - (18%)
Similarity:217/634 - (34%) Gaps:152/634 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 GVGIEEVHFL----LGSCVPELLPAQSSQERLQLF------KGLWAQLIKLG------------- 158
            |.|:.:..|.    || .:.|.:...|..:|.::|      .||..:..|||             
plant   191 GFGVFDALFSVLIDLG-MLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254

  Fly   159 ----QPTLAHYHTKLQVLRQNRLPLTDYRSLLAEIAVYHGAADSTLYGALLDVAGAAGNMRMATE 219
                :||:..|:..:..:.:.. .:...|.|..|:.......|:..|.:::|..|..|.:.....
plant   255 GAGARPTVFTYNIMIDCMCKEG-DVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVC 318

  Fly   220 ILSEMRERSLALTEHNFHALLLGHARSGDLPGAESVLASMRAAGIQQGSSTQAIWFEALLENGQL 284
            ...||::.........::||:....:.|.||........|:..|::....:.:...:|..:.|.:
plant   319 FFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMM 383

  Fly   285 AQAKELLQVEHGFTAPQLLQMLR-GLLASKDVDTDLIQLLVK--------ELPREFL-TGID--- 336
            .||.:.           .:.|.| ||:.::...|.||....|        .|..|.| .|::   
plant   384 QQAIKF-----------YVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNV 437

  Fly   337 --LPPAIRSLCIQLVHQGRTEVV--IQLVGALPAPKFELQNQNVDEYGALLLQEFFRAQVPLDQT 397
              ....|..||.....:...|:.  :...|.:|         |:..|.| |:..|.:|: .:|:.
plant   438 VTYTALIDGLCDAERMKEAEELFGKMDTAGVIP---------NLASYNA-LIHGFVKAK-NMDRA 491

  Fly   398 IQFAGQLVQRNQNVRALHLVAELALRRQPSSALRCLEDLSAA----------GEELRPHYFWPLI 452
            ::...:|..|.       :..:|.|.......|..||.:.||          |.:.....:..|:
plant   492 LELLNELKGRG-------IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLM 549

  Fly   453 LHHYRREGESGMLRLVSEMRRLRVECDEETLRHYLFPHLRQTLVQPLEAVKALESAGVKPSQTLC 517
            ..:::....:..|.|:.||:.|.:|.               |:|                  |.|
plant   550 DAYFKSGNPTEGLHLLDEMKELDIEV---------------TVV------------------TFC 581

  Fly   518 PVVSHLLQQHQMSEVLDLLDRYPTRLDLATLLQPLSSLAVNARATKRFEVFAKVIQALQQKALKR 582
            .::..|.:...:|:.:|..:|......|.......:::........:.|....:.:.:.||.|..
plant   582 VLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP 646

  Fly   583 GEDFVGSLLLQMTGPQTRLRQ----DATSLRRFLHEL-RRLEL--------------QISPAAS- 627
            ......||   |.|   ..:|    :|.:||..:.|: .:|:|              |:..|.| 
plant   647 DRTAYTSL---MDG---NFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSF 705

  Fly   628 -EALLSVVRHATDDVDLIQDLAKTLQKMKNPQLALPADTVSLHGGFIKH 675
             |.::....| .|:|..|..|      .|:.:|....:.|.|....:||
plant   706 LEEMIGEGIH-PDEVLCISVL------KKHYELGCIDEAVELQSYLMKH 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrpprc2NP_569913.1 PLN03218 <197..>292 CDD:215636 18/94 (19%)
PPR repeat 201..227 CDD:276811 6/25 (24%)
PPR repeat 233..262 CDD:276811 6/28 (21%)
PPR repeat 268..292 CDD:276811 4/23 (17%)
EMB2794NP_001318179.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 109 1.000 Inparanoid score I2075
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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