DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment ssx and PAB5

DIOPT Version :9

Sequence 1:	NP_569908.1	Gene:	ssx / 31086	FlyBaseID:	FBgn0024987	Length:	485	Species:	Drosophila melanogaster
Sequence 2:	NP_001185373.1	Gene:	PAB5 / 843507	AraportID:	AT1G71770	Length:	682	Species:	Arabidopsis thaliana

Alignment Length:	446	Identity:	109/446 - (24%)
Similarity:	172/446 - (38%)	Gaps:	102/446 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly    74 NDNSAGQQQQMQQVDRT--------SATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKT 130
            ||........:::.||.        |.||:.:..||:::||.||...|...|.|::..:|:| ::
plant   212 NDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QS 275

  Fly   131 GYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGG------------------QSIK 177
            |.|..:|||::.:...:..|::|:||..:....|.|..|:...                  :.::
plant   276 GNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQ 340

  Fly   178 DTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNN 242
            .:|||:.||..::||:.|..:||.||.:....::.:. .|..||..||.|:..|||..|:|.:|.
plant   341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNG 404

  Fly   243 TVPEGGSQPIWVRLAE--EHGKAKAAQFMAQIGGGNGGGGGGP--------PHMGPGGPMHPPHH 297
            .:.  |.:|::|.||:  |..:|.......||   ...|...|        .|..|||||..|||
plant   405 KMI--GRKPLYVALAQRKEERQAHLQSLFTQI---RSPGTMSPVPSPMSGFHHHPPGGPMSGPHH 464

  Fly   298 HNNHHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHNNNNNNHHNM 362
                       |....|:.|...|.|...:..|:..|....|                     ..
plant   465 -----------PMFIGHNGQGLVPSQPMGYGYQVQFMPGMRP---------------------GA 497

  Fly   363 GGPH---PHHMQQMHPMGMNMGM---GVNMGMGMGMGMPIHGGGGGGGGGGGGGGGGNFHHMAHR 421
            |.|:   |..:|:....|..:|.   ..||.........:........||.|....| ....|.:
plant   498 GPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQMLQQNASRFMGGAGNRRNG-MEASAPQ 561

  Fly   422 GEVFMLPLPICSRFPSQPHPVGNGICHSPNKNSRFRLSRRPQASRTTIRYIAHSVA 477
            |   ::|||:            |...:|.|...|   |.:|  :..||..:|..:|
plant   562 G---IIPLPL------------NASANSHNAPQR---SHKP--TPLTISKLASDLA 597

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	25/79 (32%)
ssx	NP_569908.1	RRM_SF	179..257	CDD:302621	27/77 (35%)
PAB5	NP_001185373.1	PABP-1234	59..661	CDD:130689	109/446 (24%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910