Protein Alignment ssx and PAB3

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_173690.1
• Gene: PAB3 / 838882
• AraportID: AT1G22760
• Length: 660
• Species: Arabidopsis thaliana
• Alignment Length: 327
• Identity: 84/327 - (25%)
• Similarity: 140/327 - (42%)
• Gaps: 62/327 - (18%)

  Fly    93 TNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157
            ||:.:..||:::.:.||...|...|.|::..:||| ::|.|..:|||:::....:..|::|:||.
plant   229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGI 292

  Fly   158 YVRNKRLKVSYARPGGQSIKD------------------TNLYVINLSRNINDDMLDRIFSPYGL 204
            .:.:..|.|..|:...:..::                  .|||:.||..:::|:.|..:||.||.
plant   293 SLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGN 357

  Fly   205 IVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAE--EHGKAKAAQ 267
            :....::.:. .|..||..||.|:..|||..|:..:|..:.  |.:|:::.||:  |..:|....
plant   358 VTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMI--GRKPLYIALAQRKEDRRAHLQA 419

  Fly   268 FMAQIGGGNGGGGGGPP---HMGPGGPM-HPPHHHNNHHHNNHHNPHMP-PHHHQPQ-------- 319
            ..:||      ...||.   |..||||| .||.|.....:.....|..| .:..|||
plant   420 LFSQI------RAPGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPG 478

  Fly   320 ---------HPHQ-HPQHHPQL------HHMQHHHPNN---HNNNHPNNHHHNNNNNNHHNMGGP 365
                     :|.| .||..|::      .::|.|....   |.|..|...:.|..:|..:.|...
plant   479 SGPGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSS 543

  Fly   366 HP 367
            .|
plant   544 VP 545

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	24/79 (30%)
		RRM_SF	179..257	CDD:302621	24/77 (31%)
PAB3	NP_173690.1	PABP-1234	49..644	CDD:130689	84/327 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910