DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment ssx and RBP-DR1

DIOPT Version :9

Sequence 1:	NP_569908.1	Gene:	ssx / 31086	FlyBaseID:	FBgn0024987	Length:	485	Species:	Drosophila melanogaster
Sequence 2:	NP_567249.1	Gene:	RBP-DR1 / 828090	AraportID:	AT4G03110	Length:	441	Species:	Arabidopsis thaliana

Alignment Length:	375	Identity:	81/375 - (21%)
Similarity:	147/375 - (39%)	Gaps:	84/375 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly    80 QQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTE 144
            :::..::.:...:..|.:..:|:.|::.:|..||.....::...|::|..|..|.|..|:...:.
plant     5 KEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSR 69

  Fly   145 SDSEDAI------QKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYG 203
            .:::..:      :.|.|   .|..|:|.|| .|.....:..|:|..|.:|:::..:..:||.||
plant    70 EEADKLVNACHNKKTLPG---ANSLLQVKYA-DGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG 130

  Fly   204 LIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNT-VPEGGSQPIWVRLA----EEHGK- 262
            .|....|||. .....:|.||::|..:|:|..|::::|.. ..||.:.|:.|:.|    |.|.:
plant   131 TIKDLQILRG-AQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRR 194

  Fly   263 -AKAAQFMAQIGGGNGGGGGGPPHMG--PGGPMHPPHHHNNHHHNNHHNPHMPPHHHQPQHPHQH 324
             .||...:|::|.|:   ...|...|  |.|.:.|.:.:..|.....:...:||..:|....:..
plant   195 LQKAQSHIARLGNGD---PTNPSLFGALPMGYVPPYNGYGYHQPPGTYGYMLPPIQNQAAFSNMI 256

  Fly   325 PQHHPQLHHMQHHHPNNHNNN---------------------HPNNHHHNNNNNNHHNMGGPHP- 367
            .|            ||..|||                     .|.|:           ||..:|
plant   257 AQ------------PNQGNNNALQGTSPDSVPPRLARRNFPMPPGNY-----------MGSGYPA 298

  Fly   368 ---HHMQQMHPMG-------------MNMGMGVNMGMGMGMGMPIHGGGG 401
               |.....:|.|             ::.||...:|:|:...:...|..|
plant   299 MRGHPFPFAYPRGIVSPRPLSSSPGSISPGMSTPLGIGLSSVVQTEGPEG 348

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	19/85 (22%)
ssx	NP_569908.1	RRM_SF	179..257	CDD:302621	24/78 (31%)
RBP-DR1	NP_567249.1	RRM1_2_CELF1-6_like	19..95	CDD:409796	16/78 (21%)
		RRM1_2_CELF1-6_like	107..182	CDD:409796	23/75 (31%)
		U2AF_lg	<231..>423	CDD:273727	24/141 (17%)
		RRM3_CELF1-6	351..423	CDD:409797
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.010