Protein Alignment ssx and PAB4

DIOPT Version :10

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_179916.1
• Gene: PAB4 / 816867
• AraportID: AT2G23350
• Length: 662
• Species: Arabidopsis thaliana
• Alignment Length: 557
• Identity: 119/557 - (21%)
• Similarity: 171/557 - (30%)
• Gaps: 238/557 - (42%)

  Fly    51 GNGGDGQEHS-------GD------EEQHHSQDNE------------------------GNDNSA 78
            |.||||..|.       ||      :.|.:....|                        ...|:.
plant    34 GGGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTD 98

  Fly    79 GQQQQMQQVD---------------------RTSATNLIINYLPQDMTDRELYNLFSGCGPINTC 122
            ..::.||:::                     |:...||.:..|.:.:.::.|:..|||||.|.:|
plant    99 DAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSC 163

  Fly   123 KIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKR------LKVSYARPGGQSIKDTNL 181
            |:..| ..|.|.|||||.:.||..:::||:||||..:.:|:      |:..........:|.||:
plant   164 KVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNV 227

  Fly   182 YVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALN----- 241
            ||.|||....||.|...|..||.|....::||. .|:.|...||.:...|:|..|::|||
plant   228 YVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEALNGKKFD 291

  Fly   242 ---------------------------------------------NTV----------------- 244
                                                         :||
plant   292 DKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITS 356

  Fly   245 ------PEG----------------------------GSQPIWVRLAE--EHGKAK-AAQFMAQ- 271
                  |.|                            |.:|::|.||:  |..:|| .|||...
plant   357 CKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMR 421

  Fly   272 --------------IGGGNGGG-----GGGPPHMGP--------------------GGPMHPPHH 297
                          .||..|.|     |.|||.:.|                    ||||..|..
plant   422 PAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPGQ 486

  Fly   298 HNNHHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHNNNNNNHHNM 362
            ................|.||...|:..||..|:  ...:.:|:. ..|.|:
plant   487 QGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPR--GRGYRYPSG-GRNMPD-------------- 534

  Fly   363 GGPHPHHMQQMHPMGMNMGMGVNMGMGMGMGMPIHGG 399
             ||.|..|.   |:..:|.:       |....|:..|
plant   535 -GPMPGGMV---PVAYDMNV-------MPYSQPMSAG 560

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	sex-lethal	<76..272	CDD:273740	76/341 (22%)
PAB4	NP_179916.1	PABP-1234	47..631	CDD:130689	113/544 (21%)