DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssx and Hnrnpr

DIOPT Version :9

Sequence 1:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_006539285.1 Gene:Hnrnpr / 74326 MGIID:1891692 Length:635 Species:Mus musculus


Alignment Length:443 Identity:76/443 - (17%)
Similarity:140/443 - (31%) Gaps:158/443 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 TNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157
            |.:.:..:|:|:.:.||..||...|||...::|.|..:|.:.||.|:.:..:..:::|::..:.:
Mouse   165 TEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSY 229

  Fly   158 YVR------------NKRLKVS------------------------------YARPGGQS----- 175
            .:|            |.||.|.                              |.:|..:.     
Mouse   230 EIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGF 294

  Fly   176 ----------------------------------------------IKDTNLYVINLSRNINDDM 194
                                                          .|...|:|.||:..:.:::
Mouse   295 CFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEI 359

  Fly   195 LDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEE 259
            |::.||.:|.:.:...|:|        .|||.:..|..|.:|:..:|....||  :.|.:.||:.
Mouse   360 LEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEMNGKEIEG--EEIEIVLAKP 414

  Fly   260 HGKAKAAQFMAQIGG---------------------GNGGGGGGPPHMGPGGPMHPPHHHNNHHH 303
            ..|.:..:..|:...                     |.|.|       |.||..:||.::.   :
Mouse   415 PDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRG-------GRGGYGYPPDYYG---Y 469

  Fly   304 NNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHNNNNNNHHNMGGPHPH 368
            .::::.:....:|..:..::.|.:                 .:.:.:............|.|.|.
Mouse   470 EDYYDDYYGYDYHDYRGGYEDPYY-----------------GYDDGYAVRGRGGGRGGRGAPPPP 517

  Fly   369 HMQQMHPMGMNMG-------MGVNMGMGMGMGMPIHGGGGGGGGGGGGGGGGN 414
            ..:...|.....|       :|...|...|.|.|.....|.|..|..|..|||
Mouse   518 RGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGARGNRGGN 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssxNP_569908.1 RRM_SF 93..173 CDD:302621 24/121 (20%)
RRM_SF 179..257 CDD:302621 20/77 (26%)
HnrnprXP_006539285.1 hnRNP_Q_AcD 37..106 CDD:375786
hnRNP-R-Q 106..630 CDD:273732 76/443 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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